Etes014335.1
Basic Information
- Insect
- Eulithis testata
- Gene Symbol
- salm
- Assembly
- GCA_947507515.1
- Location
- OX382206.1:4622565-4638313[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00041 0.025 15.2 0.2 2 23 145 166 144 166 0.93 2 11 0.00059 0.036 14.7 2.4 1 23 172 194 172 194 0.96 3 11 6.1e-05 0.0037 17.8 0.1 1 23 292 314 292 314 0.98 4 11 0.69 42 5.1 0.2 2 23 321 343 320 343 0.94 5 11 0.00021 0.013 16.1 0.0 3 23 397 418 395 418 0.90 6 11 0.03 1.8 9.4 1.1 1 23 431 453 431 454 0.93 7 11 9.7e-06 0.00059 20.3 0.2 1 23 490 512 490 512 0.98 8 11 0.00064 0.039 14.6 0.2 1 23 518 540 518 540 0.97 9 11 0.00036 0.022 15.4 0.3 1 23 546 568 546 569 0.95 10 11 0.49 30 5.5 0.2 1 23 583 605 583 605 0.96 11 11 0.0038 0.23 12.2 0.1 1 20 745 764 745 767 0.94
Sequence Information
- Coding Sequence
- ATGGATGGAGACAGAGAGTTCAACCTCCATTGGGGAGGAGGGGAGGTAGTGGTGAAGCATGACCCTGATCAACAACAAATATGTAGCATTGAAAGTGTGCACAGTGGATTTTCAAACATGACTCCCGAAGAAATAATGGCAAACACAGATCAAATGGCTGCGGAGAACTTGATGTTCCTAGCCCAGGATGTGATTAGTTATACGGACACTGCAGAACTGGCAGACGACAGTGTTGAGTGTGTCACTGAGGAAGTTATTGCAGATGATTGGGTGGTGGATGGAGGTCAGGAAATAATGGGTGTACCTATTGAGCATTTAGCAAACACTGTAGAACTAAATGAAAAAGAAGAAAATGATGTTACGGTTCCCATGCCAACAGATCAAGAAATCAACCTACATTCGCAAGATGAGTATACAGCGATGCGTCCATGGCCGTGCGATTTCTGCTCTCGTCGTTTCCGCAAGAAAGCAGCACTTATGAACCACATGGTAGCGCACCAGAACGATAGGCCTCACGCTTGTAATCTGTGTGGGGTGCGTTATGTACGGAAATGTGACCTTATGAACCATCTCAAGGTGCATGCTTATGTGCCCGACAATGCTGATTCTGTGGATTTTGAAGAATTGCTAGAAAACAACCAAAATGTCAAACCAAAGAAGAAGCGTGGTCGACGGAAAAAGATGCCTGAACCAGAAGAGGACGAATGGGAGAACATGACATCAGCGCGAACACAGCAATGGTCCCGTCGCGGTCGGTCTCCAGCCAAGCCGCCGCCGCCATCGCCACCGCCGATGTCACCACCGTCACCATCATCGCCGTCGCCGCCGTCGCCGCCGTCACCGCCGCCGCCGCCTATCGACCCGTCGCGCCCATTCGTCTGCAATACGTGTGGTATCGGCTTTGCGAGAGAGAAAGCACTGCAGTCACATTCTAGGGTTCACGGCGGTGATTCCCCGGTAGAATGCGGCGAGTGCGACGAGCTGTGTTGGTCGCGGGACGCGCTCGCGAAGCACGTGCGACAACGGCATCCGCATCTACCGCCGCGCACCACGCAACAAACCAACTACAATGAATCTGACTCTGGCGATGACATGGATTACCGGCTGTCTCCCGAGTCAGTACCCAGTAGCGGGGTACCAGAACGGCCGCCACCGGTCTACGAGAGAATGCGAGGGCCCGAGCTGTTCTGTCCGGACTGTGGTGTTGCGTTTCAACGAGCCGATTTGTTGAGGCGACATGTGGCTGCCGCGCATAGTTACAAGCGAGCTGCGAGCGGCGCGTGGGGCGAGCACACGTGCGACGCATGCGGCGAGACCTGCAGCGACGCACTGCAGCTGCTGGCGCATGCCGAGCTGCATCATCACCGGCCGAGCGACGCAGCCGCGCCTAGTGCCACCCCCGCCTCCAGGTTAAAAAGATCGTCCAAGGGACGTAATAATCCGGGTTTCTCAAGTAATTCAAGGCAATTCCCTTGTAGGGAATGTGGCAAAGTGTTCGGTTCACGGAGTTCGCAGCAAATCCACATTCGCATTCACACCGGCGAGCGTCCTTACGCTTGCCGGTTTTGTTGGAAAGCATTTGCCGATGGTGGCACTTTGAGAAAACACGAGAGAATACACACGGGTGAGAAGCCATACGCATGCGCGGTGTGTCCGCGTGCGTTCAATCAACGCGTAGTTCTCAGGGAACATGTACGATCGCACCATTCTGCGCCAGATCGCAGGCTGCATGCCAATGGTGGCGCGTATTCGTGCGTGGTTTGTGAGCGTGCGATGCACACCAGCGTCGAATTAGTACAGCACCTCATACAGCATTGTGACGCTAATACTGCGCTCAAACGACAGCCACAGACCGGGCCGCGCAAATACAAGCGGCGGCGTAAGATGAAGAGCCACGTGACGTCACCTCCCCGCGAGTGGGCGACGCCCTCCCCCCCCGCGCCGCCTCCCTCTCCCCCTCCCCCCGCGGCCGCCGCGCCGCGCTCCCCCCCCGCGGGCGGGCCGCGCCGCCGCACGCGCCGCGAGCCCGCCCCGCCCCGCCCTCGCATGATACACACATCCGAGGAGACGCGGACCAAGGctaaacagctcaagAGCTTACGGCAACGGCGGCCGCCACGGCACCCTGCCGATGACCTCCGAGCCATACGCCCACACTCCCCATCTCTATCTCCGAAGCGAGAGATCGTCTCTCCTCCCGCTTCTCCGATGCACGACACCGAAGGCACTCTCTACAAATGCGAAATGTGCGCGGAAGAATTCCCCCGTCGAAGTGACTTACTATTACATGTGCCTGTGCATATATGA
- Protein Sequence
- MDGDREFNLHWGGGEVVVKHDPDQQQICSIESVHSGFSNMTPEEIMANTDQMAAENLMFLAQDVISYTDTAELADDSVECVTEEVIADDWVVDGGQEIMGVPIEHLANTVELNEKEENDVTVPMPTDQEINLHSQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAYVPDNADSVDFEELLENNQNVKPKKKRGRRKKMPEPEEDEWENMTSARTQQWSRRGRSPAKPPPPSPPPMSPPSPSSPSPPSPPSPPPPPIDPSRPFVCNTCGIGFAREKALQSHSRVHGGDSPVECGECDELCWSRDALAKHVRQRHPHLPPRTTQQTNYNESDSGDDMDYRLSPESVPSSGVPERPPPVYERMRGPELFCPDCGVAFQRADLLRRHVAAAHSYKRAASGAWGEHTCDACGETCSDALQLLAHAELHHHRPSDAAAPSATPASRLKRSSKGRNNPGFSSNSRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRLHANGGAYSCVVCERAMHTSVELVQHLIQHCDANTALKRQPQTGPRKYKRRRKMKSHVTSPPREWATPSPPAPPPSPPPPAAAAPRSPPAGGPRRRTRREPAPPRPRMIHTSEETRTKAKQLKSLRQRRPPRHPADDLRAIRPHSPSLSPKREIVSPPASPMHDTEGTLYKCEMCAEEFPRRSDLLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00377360;
- 90% Identity
- -
- 80% Identity
- -