Etes006350.1
Basic Information
- Insect
- Eulithis testata
- Gene Symbol
- -
- Assembly
- GCA_947507515.1
- Location
- OX382220.1:5762643-5765609[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0052 0.31 11.8 4.8 1 23 152 175 152 175 0.95 2 17 0.00037 0.023 15.4 0.7 1 23 184 207 184 207 0.96 3 17 0.096 5.9 7.8 0.5 2 23 220 242 220 242 0.97 4 17 0.00048 0.029 15.0 3.4 1 23 251 274 251 274 0.97 5 17 0.00013 0.0081 16.8 1.4 2 23 286 308 285 308 0.95 6 17 3.1e-05 0.0019 18.8 0.3 2 23 337 359 336 359 0.96 7 17 9.1e-06 0.00056 20.4 1.2 2 23 369 391 368 391 0.96 8 17 0.24 15 6.5 1.0 3 19 397 413 395 416 0.93 9 17 1.3e-05 0.00078 20.0 0.1 2 23 421 443 420 443 0.97 10 17 4.7e-05 0.0029 18.2 0.4 2 23 452 474 451 474 0.96 11 17 0.001 0.063 14.0 5.2 1 23 479 502 479 502 0.98 12 17 0.0025 0.15 12.8 4.3 1 23 513 536 513 536 0.91 13 17 0.019 1.2 10.0 0.6 1 23 555 578 555 578 0.92 14 17 0.93 57 4.7 0.1 2 23 585 605 584 605 0.95 15 17 0.02 1.2 9.9 1.8 2 23 611 632 610 632 0.97 16 17 0.0039 0.23 12.2 0.3 1 23 698 720 698 720 0.97 17 17 0.28 17 6.3 2.5 1 23 726 749 726 749 0.97
Sequence Information
- Coding Sequence
- ATGTCACCACCGTTTGAAATTAAGCAAGAACCTGACGAACGCAAGGACCCAACCACCTTCCTCCCCCAAGAAGAGATGTGCTACGAGATCAAAAAGAAGAAAAAGAAAAAGAAAAAAAAGAAACAGGAAGATCCCTTCAAAGATGTGGAAGCCAAGCTAGCTGTGTTCAGGGAACCGGATATAACCGCTTTGGATCCTGATATAGGATCCTTGGATCCAGAGGTTTCCATTAAAGTTGAGGATATCGAAGTGGACTTGAATGTTGAGGAATTTCACAATGATGATGGACTTAACGAGGAATCCTTCGAAGAATGCAAATTAGAACCAACTGTAAAACTCGAAGACCAAAGCGCCGTCGTTTTGACCTTCCAGAACATTGTCAAAAACAATCTGATCAACGATAAATATATCAAACGAGATAATAGGGTAAAACTTGAACCATTAGGTGAAAACCACTTCTGCGAGGTGTGCCATCTGGTGTTCAAAACTGCAAAATCTTTAGACACGCACAGAAAACGCACACACAAGCACTATAGAAAGTCATTTTCTCATATTTGTGATGACTGCGGGATGGCGTACCAATTTAAGAACAGCTTAGTTGCTCATATTAGAAGAAAACACGGCCCGGACATTGTCCAAGATGATATGTTGGAACGAACTTGTGATCTGTGTGCACTAGTCTTCAAAGGCCAAGCTAGAATACGAATGCACATGAGACGGAAGCATGGCTTCTACCAAGACTCCTTCAACCATGAATGTGAGTACTGTGGCCTGACGTATGAAAAACAATGCAGTTTACTTGTTCATATACGAAGGAAACACACACATAAAACAAAACCAAGAAAGCAGTGGTTAAACTGCCCGTTCTGCGGCAGGTTCTTTGACAAAAGAGAAACGTACACTCGTCATATACAAAGGAATCATAAAGTCAACGATGAAGACGGTAAGCTCAGAGACGATGATGCAGAATTTAAACAAGCATACACAAACGAGAAAACCGGGGAACTAACATGCAGTCAATGTCCGTTAGCCTTTTCCACTGTAGGCTATCTCAAATGGCATATGAGAAGAAAACATAATGTCATGTTAGATGATTTTAAACTTAAATGTAAGATCTGTAACCTGTCTTATGCTAATTCTGAGAGTCTGAAACGTCACGTGCGAAGGAAACATGACAAAGGAACATTCTGTTACGTGTGCAACAGACAATATGCGGATAAAGAGGAATTTTTAAAACACTCTCACTCTAAAGTTGTCAAAGAATGCACCATTTGTGGATTGATATTCGCTAATCAGGGCGGCTTAGGGAAACATATGAGAACTACCCACAAACTAGACGGTCCTAAGACTGTTACATGTCCAGTTTGTAACCAAGGCTTCGTAACGAAGCGCCAGCTAAAACTACATTACAATCGTGTACATTTAAAAGTGACTTACACGTGCAAGTATTGTGAGAAAGTGTTGAAAACAAGAGAGTGTTACAGGAAGCATGTTATGACCAAGCATTCAACATTGTCCTTCGACGATATCAAAATGCATCAATGCGATAAATGCCCGGAGAGTTTCAAAGACGAATTCGAACTTTGCAAGCATAATAACTTCGTTCACGGGGATATGCCACCTATCGTTATCAAAAAAGAGGAAGATGATATTAAAAATGTATTCAAATGTACAAAATGTACGGATGAATTTGATAACTGGGAGTTATTACGCGTCCATTTTGAGCAGTTGCATCATATGGTGGAGGAAGTACAATGCCAAGTGTGCGGATCTATGTTGAGTAGGGGCGAATTACCCAAGCACATGAAAGTCCACGATGAAATCGAAGTCCAATGCAGATATTGCGAATTCAAGAGCAAGAATCGGGTTAGTATGACCCAGCATATGTTGAGGCACAAAAATGCTACAACATTACACTGTGACTACACTAACTGTAGATACAAAACGTTCTATGATGATGCTATGTTGAAACACAAGAGACGACATCAAGAATTAGGTGTTAAACTGCAGTGTGCAAGCTGCCCGTTCCAAACTATGAACAAATATATCTTAAAATACCACGAGGAAGCTCATTCTACAGGCAAAAAACGTTACAAGTGTGATAAATGTGATTATGCAACGATACTACCGGCTAATCTAGTTCAGCATAAGTACAAACATTCCGTTGATAAGAAGTTTAAGTGTGAAGTGTGCTCATTTGCAACTAAGTACAACACATCTTTGCGTTTTCATGTTAAAACGAAGCACTGTGATTTACCTAGTGTAAGTAAGGACTGA
- Protein Sequence
- MSPPFEIKQEPDERKDPTTFLPQEEMCYEIKKKKKKKKKKKQEDPFKDVEAKLAVFREPDITALDPDIGSLDPEVSIKVEDIEVDLNVEEFHNDDGLNEESFEECKLEPTVKLEDQSAVVLTFQNIVKNNLINDKYIKRDNRVKLEPLGENHFCEVCHLVFKTAKSLDTHRKRTHKHYRKSFSHICDDCGMAYQFKNSLVAHIRRKHGPDIVQDDMLERTCDLCALVFKGQARIRMHMRRKHGFYQDSFNHECEYCGLTYEKQCSLLVHIRRKHTHKTKPRKQWLNCPFCGRFFDKRETYTRHIQRNHKVNDEDGKLRDDDAEFKQAYTNEKTGELTCSQCPLAFSTVGYLKWHMRRKHNVMLDDFKLKCKICNLSYANSESLKRHVRRKHDKGTFCYVCNRQYADKEEFLKHSHSKVVKECTICGLIFANQGGLGKHMRTTHKLDGPKTVTCPVCNQGFVTKRQLKLHYNRVHLKVTYTCKYCEKVLKTRECYRKHVMTKHSTLSFDDIKMHQCDKCPESFKDEFELCKHNNFVHGDMPPIVIKKEEDDIKNVFKCTKCTDEFDNWELLRVHFEQLHHMVEEVQCQVCGSMLSRGELPKHMKVHDEIEVQCRYCEFKSKNRVSMTQHMLRHKNATTLHCDYTNCRYKTFYDDAMLKHKRRHQELGVKLQCASCPFQTMNKYILKYHEEAHSTGKKRYKCDKCDYATILPANLVQHKYKHSVDKKFKCEVCSFATKYNTSLRFHVKTKHCDLPSVSKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01429284;
- 90% Identity
- -
- 80% Identity
- -