Etes004326.1
Basic Information
- Insect
- Eulithis testata
- Gene Symbol
- -
- Assembly
- GCA_947507515.1
- Location
- OX382216.1:8067234-8069660[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.056 3.4 8.5 0.2 1 20 76 95 76 97 0.94 2 18 2.1 1.3e+02 3.6 3.4 3 23 103 122 102 122 0.96 3 18 4.5e-05 0.0027 18.3 1.2 1 23 127 149 127 149 0.99 4 18 0.0024 0.14 12.8 1.7 2 23 154 176 154 176 0.95 5 18 0.022 1.3 9.8 4.2 2 22 180 200 179 200 0.94 6 18 0.00039 0.024 15.3 0.7 1 23 209 232 209 232 0.94 7 18 0.00013 0.0077 16.8 6.1 1 23 238 260 238 260 0.98 8 18 6.5e-05 0.0039 17.7 1.6 1 23 267 290 267 290 0.97 9 18 0.00028 0.017 15.7 0.8 1 21 303 323 303 327 0.91 10 18 0.0019 0.12 13.1 0.8 2 21 430 449 429 450 0.93 11 18 9.6 5.8e+02 1.5 0.1 2 13 455 465 454 477 0.75 12 18 0.41 25 5.8 0.8 3 23 483 504 481 504 0.93 13 18 0.0002 0.012 16.2 0.5 1 23 509 531 509 531 0.97 14 18 0.0011 0.066 13.9 4.4 1 21 534 554 534 555 0.95 15 18 0.00037 0.023 15.4 1.0 1 23 567 590 567 590 0.91 16 18 2.6e-05 0.0016 19.0 2.9 1 23 596 618 596 618 0.97 17 18 0.22 13 6.6 5.7 1 23 652 675 652 675 0.94 18 18 0.00077 0.047 14.4 0.1 3 23 685 706 684 706 0.97
Sequence Information
- Coding Sequence
- ATGCTCGATATTTCCACTAAGACTAAAGCTAATACGGCATATATTTTTGTCACTGATAGCTCTGTCCGAACTGTGCTAGAACGAAAGGGAAAAGAAAGAAATCTGGACCCGAAAAAGGTAGCAATTCGCATAAATCTTCTACAAAAGGAAAATAAACGAAAACCGTTCAAAAATGCAGTTCCTTTAGAAACGCTTGAAAGAACTATACAGCGGAAAGTGAGAAGTTATACCTGCGTGGAATGCGGATCCAAGTTTAGAATGCTGTCTATGATCAACCACCACTTAGCTAATCAGAACAAGCGACTATGCAAGCATTGCCACAAAATTGTAAGCTTGAAATCATTCGCGGAGCACTTGGAAACGCATCAGATAACTTTCTACAAATGCACGGTTTGCTCTTTACCTTTCGACTCCAAGCAGCAGTTGGAAAAGCACAAAAAGGTGCATTTAGGAAGGAATGTGTGCTCAGAATGCAAAAGAACTTTCCCCACAGCCGATAGACTAACGCTGCATGTGCACAGAAAGCATGAGGCAGATGTCTGCAACCACTGCAGCCTGAAATTCTCCAATAGAATCTGCCTGTACAAACACAGACGTAGATGTAGATGTAAACAGCAAAAAAACTTCGTTTGCGATTATTGTTCGAAAGAGTTCAGCAGTAGAACCACAATAACATCCCATATAACACTTGTTCACGCTAAGAAACTCATGCACCAATGTGAATACTGCGGTAGGAAGTTCAACAGCGCATGCCATTTAGAAGAACACTATGAAACTCACGAGTTCAGACCGGATAGATTCGTGTGTCCATACTGTGGCAATAAATACAGTACCACTAGAGGCTTCAGAAATCACATGAGACTGAAGCACTACAGTCTACATCGAGAGCTGAAAAACAATGTCAAGTTCTCGTGTGATATATGTTCGAGGGACTTCATCAGCGAAAAGAATTTAAACAATCATTTGAAAGCGAAGAAACATAAGGATCGAGTCGACGAAGACGCAGTCCTCCCGCCGGGGCTCTGCCGCGCTTGCGTGTCTGACGTCATTACCGCCGCCAACTTCAAACATCTCTACGAGAACTCCGCTTCCCAATGGAGCGAAGCAGCTACTTACCTCTCCAATATAAACCTCGCGAGCGAAGACAAAACACTATTCCTTATGTGCGAGGATAACGACATTCTTGTATCTGAAGAGAAGTTTGACAATCTAGAATCCGCAGTGACCACTTTGAAATACTTCAAAAAGAAAGCAGGCAGGAGAAAGCCAAAGCGACTATTGAACTGCGTTTGTCCATACTGCGAGAAAATGTTCCAATCAGCTGAAAGGCTAAATGATCACTTGAAGAAAGCATTGAAAAGCATGTGCTCCGAGTGTGGACTGACTCTAAACAAGTCTGAGATCCCAGACCACCTGCTTAATGCTCACCAGATCGAAAGAATGCACTGCAGCATCTGCTACGATATGTTTAGCAACTATGACGACGCTAATTGGCATATGACACAATACCATGGCTCCAAATCCTACACTTGTCAAACCTGCGGGCGCGGTTACAAAAACGAAAGAGGCTTACGAGCGCATTGGTACTCGCACACCCTGTTCAGCTGCTCGGACTGCGGCCGAAGCTTCGAGAGCAACCGTTGCTACCGACATCATAGAAAAGTATGCGCTTCGAAGCGTAAACCCACTTTCAGTAGCTACGAATGCCACGACTGCGGCGCTAGATACAAGAAAAAACCTTCCCTAAGAATACATGTAGTCCAAAAACACTTGAACGTGCTCCCGTTCGCTTGCCAAACATGCGGTAAGCGGACTTCTACTCAAGCGCATCTAAAATCGCACGAGAAAACCCACGAAGCAGATAGGAAGATACTGGAGTGCCATTGCGGAGCGAAATTCCGCTCGAAGTTGGGACACCATCTTCACATGCGAGTCCACAGTGGACTGAAGCCTTACAAGTGCAAGCATTGTGAGGAGCACTTTATCTCGTCTTCGCGCCGATTGGATCATGAGAAACGAAGGCATAAGAGTAGTATGGAACTCGCACACGGGTGCGATCAGTGCCCGGCAAGGTTCATACGTCCCTGGGAACTGAGGAAGCATTATAAGCTGTATCATAACAAGGCGTGTGACTAG
- Protein Sequence
- MLDISTKTKANTAYIFVTDSSVRTVLERKGKERNLDPKKVAIRINLLQKENKRKPFKNAVPLETLERTIQRKVRSYTCVECGSKFRMLSMINHHLANQNKRLCKHCHKIVSLKSFAEHLETHQITFYKCTVCSLPFDSKQQLEKHKKVHLGRNVCSECKRTFPTADRLTLHVHRKHEADVCNHCSLKFSNRICLYKHRRRCRCKQQKNFVCDYCSKEFSSRTTITSHITLVHAKKLMHQCEYCGRKFNSACHLEEHYETHEFRPDRFVCPYCGNKYSTTRGFRNHMRLKHYSLHRELKNNVKFSCDICSRDFISEKNLNNHLKAKKHKDRVDEDAVLPPGLCRACVSDVITAANFKHLYENSASQWSEAATYLSNINLASEDKTLFLMCEDNDILVSEEKFDNLESAVTTLKYFKKKAGRRKPKRLLNCVCPYCEKMFQSAERLNDHLKKALKSMCSECGLTLNKSEIPDHLLNAHQIERMHCSICYDMFSNYDDANWHMTQYHGSKSYTCQTCGRGYKNERGLRAHWYSHTLFSCSDCGRSFESNRCYRHHRKVCASKRKPTFSSYECHDCGARYKKKPSLRIHVVQKHLNVLPFACQTCGKRTSTQAHLKSHEKTHEADRKILECHCGAKFRSKLGHHLHMRVHSGLKPYKCKHCEEHFISSSRRLDHEKRRHKSSMELAHGCDQCPARFIRPWELRKHYKLYHNKACD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -