Etes018829.1
Basic Information
- Insect
- Eulithis testata
- Gene Symbol
- -
- Assembly
- GCA_947507515.1
- Location
- OX382218.1:2700375-2702990[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.016 0.97 10.2 1.3 5 23 354 372 352 372 0.96 2 12 0.044 2.7 8.8 0.2 3 23 380 400 378 400 0.91 3 12 0.85 52 4.8 0.2 2 23 408 429 407 429 0.90 4 12 3.9e-08 2.4e-06 27.9 0.9 2 23 435 456 435 456 0.98 5 12 4.8e-05 0.0029 18.2 2.1 1 23 462 484 462 484 0.98 6 12 0.003 0.18 12.5 0.0 3 20 494 511 492 513 0.92 7 12 0.00019 0.011 16.3 0.2 1 23 548 571 548 571 0.96 8 12 0.00021 0.013 16.1 0.0 3 23 580 600 579 600 0.98 9 12 0.00024 0.015 15.9 1.2 1 23 609 631 609 631 0.98 10 12 2.8e-05 0.0017 18.9 4.5 1 23 637 659 637 659 0.98 11 12 0.0028 0.17 12.6 0.3 3 23 667 687 665 687 0.98 12 12 7.1e-05 0.0043 17.6 0.9 1 23 693 716 693 716 0.97
Sequence Information
- Coding Sequence
- ATGGAGACGTGGACAGACCTTTGCCGTTGTTGTCTATCTGCCAATTCTGAATACTCAATTTTGGATGATAAACAGAACATTGCGCAGAAGTTCTTGGAAACAACAACTATTGAGGTCAAAGTAGATGACGGTTTGCCTCAAAAGCTGTGCAACGATTGCTACTCAGTCATGAATTCTGCGTACCAATTTAGGAAGCAATGCATCAAAATGGACACAGAGCTGAAATCCCAATTGAACCAGCTCCTGAGCCAATGCAATGAGGACAACATCGAGACATTTGAGAACAATGCAGATGGGGAAAGTCAAGAAAATATGGATATAGAGTTTGCCAATGATCCAATGAAACAACTTGAGGCAATTATAAAACAAGAACCGATGGACAAAGACGATGACTTCTATTATGTTCTTGTCATTGACAATCCTAAGGATAAGGACAGTACAGAGGATGCATCAGAACTTATCAAGTCAATAAAATCTGAGAAGGAATTAGAAGAAAATAATACATGCAATAATGAAACCATAGTTCCTGAGATTGAAGACGTGGCAGTTAGTGAAGGTACTGAAACTGAATACCAAATTGAAGAAGGAACAGATAGTCATAATATAGAGCTTGAGCATTCTATGGACTCTTTCCTCATCAGTAATGCCATCTCAGCAAATGTACCAGCCACTATTCTAGAAAATGAAGAAGAATATCAAGACGAAGATAATGATAACATAACAGAATATAATGGCAACCAAGATACAGTCGACCCAGCAGATAATGACGGCATACATATTACAGATGAACACAGCTTAATGAAGATACTGACCGGCCAAAATTTTACCCAAGATAGCTCTGGTACGATATTCTTGAAATCAAATGATGGAATCAGTTTCTTAGCCGATGGAGAAATAGTCTCAAATGATGATGATCAAGACGACTCCCCTGAAATCATCTACTATGAAGGTGATAGTGATTCGCAGTTCCAAATCGTGAAGTATACTGGTACTGAATTAGTATTGGAATACAGTGACGATGGTAAACAAGATGCCACGATCACCCAAACATACAACTGTGAATGCGGGGAGCAGTTTACTGATTACGATGACTATCTGAAACACCAACACAAACATAACCCGGCTGGGGACCATCTATGCACGCTCTGCGGTAAAGGGTTTGAATCCGCTGAGATTCTAACAGGCCACATGGTACTCCATAATGTACCAGGGATGCTACTCCAATGCCCGTTCTGTGAGGTAGTCATGAAACGAAGCGCCCTCACACAGCATATAAAATATTTACACAACAATATCAAACCCCAGTGCAAGATTTGCAACAAAACGTTTGCCAACCCCAACAATCTAAAACGTCACATGATGATTCACACCGGGGTAAAAGAATTCGAGTGTGATATCTGCCGTAAAAGGTTCAGTCAGAAAATAACCATGCAAACACACCGCCTCACGCACTTGAACCCTCAACTACCACCACTAGCTTGCCCAGGTTGTGAGGTTGTGTTCAACACTAAAGAAGGTCTCACCCAACACGTTGAAAAAGGCGAATGTCCTAAGTCGAAAACCATTGATCCAGACACAAAAGACGAGCTGATGAAGGCTGTGAAGAAGGAAGTCAAAACGAGCTTAGGGAAGCTGTTGGGTTACGCATGCTCATTATGCAAGAGAATGTTCTCAATCGAATCGGCTTTAGAACGCCACATTGAATCAACGCACATCATCGATCCATCCGAGTTACTGTGCTCCGAATGCGGCGAAGTACTAAGCTCCAAGAAAGACTTGGCAGCTCACATCCTATCTCACGACAAGCGTAAGACTGTAAAACGTTTTTCATGCTCATCTTGCGGAAAAATGTGTTCGAGCCAAGCTATGCTCCTAATGCATGAAAGAGTCCACACAAACGAACGACCGTATTCGTGCCAACTTTGCCCGTTGAAGTTCAAAACAAAAACGCATCTACGGACTCACCAACTCACCCACACAAGAGAAAAGAAGTTTGGGTGCTCTGTGTGTATGAAATTCTTTGCCCTAAAAGGTAATTTAGTGGTACATTTACGCACACATACAGGAGAGAGGCCTTATGTGTGTAGTGACTGTGGCGATGCGTTCATAGACTCGAAATATTTGAAGAAGCACAGACAAAAGAAACATTCGACAGAGAATGTGCCTTGGAATCAGTTTTTCAAAGTTAAAATGGAAGATCTTGCTTAG
- Protein Sequence
- METWTDLCRCCLSANSEYSILDDKQNIAQKFLETTTIEVKVDDGLPQKLCNDCYSVMNSAYQFRKQCIKMDTELKSQLNQLLSQCNEDNIETFENNADGESQENMDIEFANDPMKQLEAIIKQEPMDKDDDFYYVLVIDNPKDKDSTEDASELIKSIKSEKELEENNTCNNETIVPEIEDVAVSEGTETEYQIEEGTDSHNIELEHSMDSFLISNAISANVPATILENEEEYQDEDNDNITEYNGNQDTVDPADNDGIHITDEHSLMKILTGQNFTQDSSGTIFLKSNDGISFLADGEIVSNDDDQDDSPEIIYYEGDSDSQFQIVKYTGTELVLEYSDDGKQDATITQTYNCECGEQFTDYDDYLKHQHKHNPAGDHLCTLCGKGFESAEILTGHMVLHNVPGMLLQCPFCEVVMKRSALTQHIKYLHNNIKPQCKICNKTFANPNNLKRHMMIHTGVKEFECDICRKRFSQKITMQTHRLTHLNPQLPPLACPGCEVVFNTKEGLTQHVEKGECPKSKTIDPDTKDELMKAVKKEVKTSLGKLLGYACSLCKRMFSIESALERHIESTHIIDPSELLCSECGEVLSSKKDLAAHILSHDKRKTVKRFSCSSCGKMCSSQAMLLMHERVHTNERPYSCQLCPLKFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSDCGDAFIDSKYLKKHRQKKHSTENVPWNQFFKVKMEDLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00737702; iTF_00632977;
- 90% Identity
- -
- 80% Identity
- -