Basic Information

Insect: Eulithis testata
Gene Symbol: RPH1
Assembly: GCA_947507515.1
Location: OX382212.1:9865376-9867354[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 5.6 3.4e+02 2.2 2.5 2 23 4 25 3 25 0.91

2 13 6.1e-05 0.0037 17.8 0.8 2 22 150 170 150 170 0.96

3 13 7.6e-05 0.0046 17.5 0.2 5 23 182 201 179 201 0.95

4 13 0.01 0.64 10.8 2.5 1 23 209 231 209 231 0.95

5 13 3.8e-07 2.3e-05 24.8 1.5 1 23 237 259 237 259 0.98

6 13 8.7e-05 0.0053 17.3 1.3 1 23 264 286 264 286 0.99

7 13 0.00037 0.022 15.4 0.4 1 23 409 431 409 431 0.98

8 13 7.1e-05 0.0044 17.6 0.6 1 23 437 460 437 460 0.93

9 13 0.00019 0.012 16.3 1.5 3 23 468 488 467 488 0.98

10 13 5.3e-08 3.2e-06 27.5 1.0 1 23 494 516 494 516 0.99

11 13 0.00022 0.013 16.1 0.0 1 23 522 544 522 544 0.96

12 13 0.54 33 5.4 0.4 5 20 553 568 550 571 0.92

13 13 0.066 4 8.3 0.1 1 23 577 600 577 600 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	5.6	3.4e+02	2.2	2.5	2	23	4	25	3	25	0.91
2	13	6.1e-05	0.0037	17.8	0.8	2	22	150	170	150	170	0.96
3	13	7.6e-05	0.0046	17.5	0.2	5	23	182	201	179	201	0.95
4	13	0.01	0.64	10.8	2.5	1	23	209	231	209	231	0.95
5	13	3.8e-07	2.3e-05	24.8	1.5	1	23	237	259	237	259	0.98
6	13	8.7e-05	0.0053	17.3	1.3	1	23	264	286	264	286	0.99
7	13	0.00037	0.022	15.4	0.4	1	23	409	431	409	431	0.98
8	13	7.1e-05	0.0044	17.6	0.6	1	23	437	460	437	460	0.93
9	13	0.00019	0.012	16.3	1.5	3	23	468	488	467	488	0.98
10	13	5.3e-08	3.2e-06	27.5	1.0	1	23	494	516	494	516	0.99
11	13	0.00022	0.013	16.1	0.0	1	23	522	544	522	544	0.96
12	13	0.54	33	5.4	0.4	5	20	553	568	550	571	0.92
13	13	0.066	4	8.3	0.1	1	23	577	600	577	600	0.95

Sequence Information

Coding Sequence: ATGGAGCTCGTCTGTCACAAATGTGAATTGAAGACTTCCAGTGACATGTTCTACCAGCATTTGAGTTCTAAGCACGACGGTGTCAGGAACAGAGATGATGTAGAATCATTTGTGAGGGATCACGTGACATTTGAAGAATCTCTCGATTCAGATTTCGATGAAAATTGTACTACACTTAAGTCTTTATCTTCTGAAGCGATCCGTCTAGACTGCCCTCCCAGTAGCACTTCATTTACAGGCAGTTCGCGTATCCTATCTGAACATGATGTGAATGTCGATAATATTTCGCGTGATGACTTCTCCAAACACCAGAGAAAAAAATGTCGGTCTGTTCCCTCACGATGCAAGAGTCGCGGTCGCGGCCGCGGCCGCGTCGCAGCAGATGCGAGATTCAATGCAAGTTTATCTCAAGTAAAATATAAAATCAGCCAGAGACGCATCCCTGCCGTCTGCCCGAACTGTAATCGCACGTATATTAACAAGTACACCATGCGCAAGCACATGAAAACTTTCTGTGGTGAATTTAGAGAAAAGTACGAGTGTGAGTGCGGGAGGAGTTACACTTCGCGCTCGAACTTGTTGGCGCATACACGAATAGTGCACCTGGGCCTGGCACCGCCGTATCACACTTGCACGGAGTGTGGAGCCATGTTCCGCTCTCGCGCCTCCCGCGAGGCGCACTGTCGGGTGCACTCGGGCGTCCGGCCCTTCTCGTGTACCATCTGCGGGCGATCGTTCTACTCCAAGGCCATGCTGATGCAGCACCAGAAGACGCACGAACCGCCTCAGTACGAATGCCAATTCTGCGAGGTGTGGTTCAGAAGAAGGTCGGGTCTGAAGTCTCACATGCGCACGCACGAGCACGACGATCCAGATTTCGACTGGAATTTTTACTCCTTGAAAAGGCGACCCGACAGCAGGAGCCGCCTCATGTCCGTCGCGGCCGAGGACTCGCCGGATCGCGATTCGGACGACTCGAGGACGCCGCTCGCCGAGCTCGCGCCTCGCGACCCGCTGGCCGCGCTGCGTCGGGCGCTGCGCGACCTGCGCGACCACCACGCCGAGCGACACGAGTCGCGCGCGTCCCGCGTCGAGCGCGACCCGCAGCCGCAGCCGGGGCCCGTGGACGACCTCACGCGACGGAACATGCGCCGCGACCGGTTCGACGAGGCGACGCGGCGCGCGCTCGACGCGGCGCGAGTACGCGTCGACGGCGCCGCGCGCTACGCCTGCCCCCAGTGCGGCCGCCGGCTCGCCTCCCCGCACGCCTTCGTGCACCACGCGCGCATCCACTCGGGGGAGCGACCGCACGTCTGCCACGTCTGCGGGAAGCGGTTCCGCGCGCCGCAGGGCCTCGCGCGGCACCTCGCCGAGACGCACGAGCGACGCCGCCGCCGCGCGTGCCGCCTCTGCCGGCGAACCTTCGCCAACGATCAGAACCTGCGCCAGCACCTGCGCACGCACACCGGCGAGCGACCGTACCAGTGCCCCGAGTGCGGGAGGCGGTTCGCGCAGAGCGGCTCCCTGCACGCGCACCGCCGGACGCACTCGCCGCGTCGCGCCTTCGCGTGCCCCGACTGCGGCGCCGCCTTCCGCCTCCGCGCCGGCCTCGCGCGGCACGCCCTCCGGCACGCGGGCGCGCGTCCGCATCGCTGCGGCTGCGGGCGCGCGTTCGCGGCGCGACACGAGCTGGCGGCGCACCTGCCGCTGCACGGCGAGGCGAGCCCGCACGCGTGCGCGCTCTGTCCCGCCGCCTACAAGCTGCGCCGCGCGCTGCGCGACCACGCGCGCCGCGCGCACCCGCCCGCGCCCACCGAGCTCACGCGCGACTCGTTTCCAGGAGCGACGGCGACCTAG
Protein Sequence: MELVCHKCELKTSSDMFYQHLSSKHDGVRNRDDVESFVRDHVTFEESLDSDFDENCTTLKSLSSEAIRLDCPPSSTSFTGSSRILSEHDVNVDNISRDDFSKHQRKKCRSVPSRCKSRGRGRGRVAADARFNASLSQVKYKISQRRIPAVCPNCNRTYINKYTMRKHMKTFCGEFREKYECECGRSYTSRSNLLAHTRIVHLGLAPPYHTCTECGAMFRSRASREAHCRVHSGVRPFSCTICGRSFYSKAMLMQHQKTHEPPQYECQFCEVWFRRRSGLKSHMRTHEHDDPDFDWNFYSLKRRPDSRSRLMSVAAEDSPDRDSDDSRTPLAELAPRDPLAALRRALRDLRDHHAERHESRASRVERDPQPQPGPVDDLTRRNMRRDRFDEATRRALDAARVRVDGAARYACPQCGRRLASPHAFVHHARIHSGERPHVCHVCGKRFRAPQGLARHLAETHERRRRRACRLCRRTFANDQNLRQHLRTHTGERPYQCPECGRRFAQSGSLHAHRRTHSPRRAFACPDCGAAFRLRAGLARHALRHAGARPHRCGCGRAFAARHELAAHLPLHGEASPHACALCPAAYKLRRALRDHARRAHPPAPTELTRDSFPGATAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -