Etes006367.1
Basic Information
- Insect
- Eulithis testata
- Gene Symbol
- -
- Assembly
- GCA_947507515.1
- Location
- OX382220.1:6160459-6178426[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1 64 4.5 2.5 1 23 210 241 210 241 0.81 2 12 0.011 0.67 10.7 0.0 1 23 246 268 246 268 0.96 3 12 0.00013 0.0076 16.8 1.0 1 23 280 302 280 302 0.95 4 12 1.7e-05 0.0011 19.5 2.6 1 23 308 330 308 330 0.98 5 12 7.9e-06 0.00048 20.6 1.8 1 23 337 359 337 359 0.99 6 12 4.4e-06 0.00027 21.4 0.4 1 23 365 387 365 387 0.93 7 12 5.8e-06 0.00035 21.1 0.1 1 23 393 415 393 415 0.97 8 12 3.2e-06 0.0002 21.8 1.4 1 23 421 444 421 444 0.96 9 12 7.8e-06 0.00048 20.6 1.9 1 23 450 473 450 473 0.95 10 12 0.00021 0.013 16.2 3.1 2 23 480 501 479 501 0.97 11 12 2.2e-05 0.0013 19.2 1.1 1 23 507 529 507 529 0.97 12 12 0.00016 0.01 16.5 0.1 1 23 535 559 535 559 0.94
Sequence Information
- Coding Sequence
- ATGATCCAACCGAGTGAACTATCAGAAAACACAAACACTATCAATATTAGTGAGTGGAATGTGAACAGTTTGCCGAATGAAATATTCTCTAATAACGATGAGTGTGATGGAAACGAGCCGGGGAATCAGAAAATTGAAAGCAATAAAGATGGCCAACTAATCCCAGTATCTCAAAGTGACGGTGACCCGATTGCAATGGATCCATCAACTATAAAGACTGAAAATGCCGACGACGCACTGTATACAAACACGGAGAGTTACGAATTAATACTGGAAGGTCAAGACGATGACGAACAACAAACAATAGTAGTGGACAGCAACAATCCAATACTACAGATGATGTCGGGTCAAAAACTAGTGTATGAGAACGGACAGCTGTCACTGTTTATGGACGACGATGATGATGATGATGAACAAGATTCAAACGACGAGGAATCACAGATAGAGCTCCAAGTTTCTGGCGACGAGGAAACTGCGAATGCTATAATAGCAGCCGCACAAGAACAAGGTGGTGCCTTCATAAAGGTGGAGAGTGGTGAGATGTATCGCGTGAAGTCAGTAGCGAGTGCACATGCCGACAGCCCACCTGATACAGCAGCGCTACTCGTCGCTAAGGACGGAGACCAATACAAGTGCCTTGTGTGTGATAATAAACGTGGGCCAATAAAGATGACGTATACGTGTGATGCTAGTAACATGGTGAAACATATGAAAACTGAACATTCAGCGAAAGTGTACATTTGTTCCGTCTGTGGTATTATTATGCGCAATCGGTCTGAATACGCTTCGCATATGGCGGATCACACAAAAGAACTCGGAATAACAAAATCGCGATCATACGATTGTGAGATTTGTAAAAAGAGTTATACATCGCGTACTTTGTTGCAAGAGCACAACAACCTGCACACCGGCAGCCGGCCGTATGCGTGCCACATTTGCGAAAAAACATTCGCATCTAAATACACCAGACAGGCACATTTGAAAACTCATCAGGTGAGACCTCGTCCATATAAATGTGAAAATTGCGGCAAATCATTCCTCTCGCAACAGAATCTAACGCAGCATGAGAAAACACATCTCGGAATCAAGAGTTTCGTTTGCAACATATGTAATAAAGCGTTCAGTACGCAGCACAGCCTGGAGGTGCACGGCGTGGTACACAGCGGCCAGAAGAGCCACGTGTGCGACGTCTGCAGCAAGGCCTTCGCGAGACGAGCCGAACTAGTCGACCATATCAGAATACATACAGGTGAGCGTCCATTTGAGTGCGAAGTGTGTGGTGCCAGGTTCTCGCAGCGCTCGAACCTGCACTCGCACCGTCGCGCCACGCACTACGACGAGAAGCGCCACGTATGCACTGACTGCCCTAAACGATTCAAACGTAGAAGATTACTGCAATACCACATAAAGGCGGCGCACACGGGCGAGCGTCCACTAAAGTGTGACATATGTCACTCCACCTTCGTGTATCCGGAGCATTACAAGAAACATGTCAGAATACATAATGGCGAGCGGCCTTATTACTGCGAGATATGCGGCAAGGCGTTCAACTCTCGCGACAACAGGAACACGCACCGGTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCCTCGAGTGCGGCGCCTCGTACATGCGCAAGCGCATGCTCGTCGCACACATGAACACCAGTGGTCACTTAGCAGAATCTATAGTTGTGAACCAGCCTAGAGTTACAAAGGTCAATGAACACCAGAAAGTGGAAGTACTTGATGAAGAAAATGATGATGAACAAGAAGTGGATAATGAAGAAAGTGCAAACATTTACACCGTATCTGAAGATGGTGATGTCATAGAAAGCAGTGAAATGCCCATAGCTAACTCTGACAGTTTGGAACCGCCCCAAATCACGGATGAAAATGGCACAATTATCAAATTCATTCAAGTACAGATGCCGGACGGTAACAATGGATGGGTGGCGCTTGACGACTGA
- Protein Sequence
- MIQPSELSENTNTINISEWNVNSLPNEIFSNNDECDGNEPGNQKIESNKDGQLIPVSQSDGDPIAMDPSTIKTENADDALYTNTESYELILEGQDDDEQQTIVVDSNNPILQMMSGQKLVYENGQLSLFMDDDDDDDEQDSNDEESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVASAHADSPPDTAALLVAKDGDQYKCLVCDNKRGPIKMTYTCDASNMVKHMKTEHSAKVYICSVCGIIMRNRSEYASHMADHTKELGITKSRSYDCEICKKSYTSRTLLQEHNNLHTGSRPYACHICEKTFASKYTRQAHLKTHQVRPRPYKCENCGKSFLSQQNLTQHEKTHLGIKSFVCNICNKAFSTQHSLEVHGVVHSGQKSHVCDVCSKAFARRAELVDHIRIHTGERPFECEVCGARFSQRSNLHSHRRATHYDEKRHVCTDCPKRFKRRRLLQYHIKAAHTGERPLKCDICHSTFVYPEHYKKHVRIHNGERPYYCEICGKAFNSRDNRNTHRFVHSDKKPYECLECGASYMRKRMLVAHMNTSGHLAESIVVNQPRVTKVNEHQKVEVLDEENDDEQEVDNEESANIYTVSEDGDVIESSEMPIANSDSLEPPQITDENGTIIKFIQVQMPDGNNGWVALDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -