Etes003933.1
Basic Information
- Insect
- Eulithis testata
- Gene Symbol
- salm
- Assembly
- GCA_947507515.1
- Location
- OX382216.1:4275259-4277953[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00037 0.023 15.4 0.4 2 23 191 212 190 212 0.96 2 14 2.7e-05 0.0017 18.9 2.0 1 21 218 238 218 239 0.94 3 14 3.1e-06 0.00019 21.9 1.6 1 23 257 279 257 279 0.96 4 14 2.2e-05 0.0013 19.2 0.4 1 22 285 306 285 306 0.96 5 14 0.12 7.4 7.4 1.1 1 23 317 339 317 339 0.93 6 14 0.00025 0.015 15.9 0.6 1 21 345 365 345 366 0.94 7 14 6.2e-06 0.00038 20.9 0.5 2 23 375 397 374 397 0.95 8 14 0.099 6 7.7 4.6 1 23 403 425 403 425 0.98 9 14 2.3e-05 0.0014 19.2 2.2 1 23 431 453 431 453 0.95 10 14 0.0063 0.38 11.5 2.6 1 23 459 481 459 481 0.97 11 14 3.2e-05 0.0019 18.7 4.2 1 23 487 510 487 510 0.97 12 14 0.00012 0.0074 16.9 0.0 1 23 516 538 516 538 0.98 13 14 3.6e-05 0.0022 18.6 0.9 1 23 544 566 544 566 0.99 14 14 0.043 2.6 8.9 0.2 2 22 573 593 572 593 0.91
Sequence Information
- Coding Sequence
- ATGTCGACAGAATCCGTGTGCCGTGTGTGTCTTATCCGCGATGTGATGATGGCAGGTCATAGCTTTGAAAAAGGATACACTCAACTTCGAGAGCTATACGAAAAACTCACAGGAACCAAGCTTAACACCGATGATAGAATGCCTAAGATGGTTTGCTCCTTCTGCTATTCTCAGCTAAGGAGGTTTGGAAAGTTCTCAGAAATGGCTCTAAAGTCGGAAAACATTCTTTTGGACCTATTTAGCAGTGGTGTAGAAAAGGTAACGCGCGACTCCATACCTATGTCGTGCCTGGAAACTACACATACTTTATCGGAAACCCCTGCTCAGCTTGTGTCTATGGGTGATGATTACTCGATCCATGGATACCTAACACCAAACACAGCTCAAAACAGACAAGTCAACAGCTATACCTATATAAATGATAATAATCAATTACCATTGAAAAAGGAAAAAATTAAAATAGAAACAAATTCTGAAGAATCAATAAAATCAGAGAATATAATGTGTAACGATGGTAAAGTAGAGATTAAAGTGGAAATTGTTGAAGCAACGGAAGAGGAATCATCTTTGAGCTGTGATCTTTGCACAAAGAAGTTTGCAACGATATATCTGCTCAGGTCACACTTAATATCTCATTCCAACGAGAGACCTCATGCTTGTAAAAATTGCAACAAATCATTCTCAAGAAAGCAGACCATGGTGCGACATATGAAAATTTGTATTAAGGATCACATCAAGGGTGAAGCCTCAGTTTCTGACAATCAGTCTTTtaaatgtgataattgcaacaaaagtttttccacaaaagccctcttaaaatctcacaaagtcgtccatagtggagagaaaccgtttgtctgtgatggttgtaagaaatcttttgccagaaaacaaggcatgaaacaacacatgctgacctgcacagaagtgaagccccttgcaccaacatacccttgccagtattgcacaaaaatatttgattgtgacattgatctaagtgatcacattacaacacattctaaagacaggccatacacatgcgataaatgtaataaaacattcacAACAAGACCGATCCTGCGCCAGCACTTGAAGATATGCTTCCTGGAGAATGAAACGGTGCCATGCTCACTCTGTCCTGAAACCTTCAGTAGCAGAAGTGATCTATGCAAGCACTTAAATATTgcacattcatcacagaagccgttctcttgcgacaggtgcagcgccaagttctggtccaagaaccacttgaaaatgcacttcaggactcacacgggagagaaaccttttgcatgtgaagtctgcggcaggacttttacgctgcggagccatctgaaaacccattttggtactcacactggggaaaaaccgcattcctgtgaagtttgtggcaaagctttcctcgctcggttctgcttgatggagcacatgcgctcccatacaggcgaacggccgttcgcctgcgataaatgtggcaaagcctttggccataaatgcactctccgtcaacatttgcgtaaagtccatattcaagtaaaaccatttgtctgcgcaagatgtccgctctcgttcgctgttgaaagcgcattagcggttcacatgcgcgttcacacagcggaaaggccatatacatgtgatatttgcagtaaaaccttctttgatgtccgctatttgaaaggtcacatgcaagttcattctacagagaggccgcatgcttgTCTGGCGTGCGGTAATAGGTATAAGAGACTCGTTGATCTCAGGCTACACATCAGATCTAAGTGCAAGGCTGCACGCGCCATACCAGGCATGTGTTCTTAA
- Protein Sequence
- MSTESVCRVCLIRDVMMAGHSFEKGYTQLRELYEKLTGTKLNTDDRMPKMVCSFCYSQLRRFGKFSEMALKSENILLDLFSSGVEKVTRDSIPMSCLETTHTLSETPAQLVSMGDDYSIHGYLTPNTAQNRQVNSYTYINDNNQLPLKKEKIKIETNSEESIKSENIMCNDGKVEIKVEIVEATEEESSLSCDLCTKKFATIYLLRSHLISHSNERPHACKNCNKSFSRKQTMVRHMKICIKDHIKGEASVSDNQSFKCDNCNKSFSTKALLKSHKVVHSGEKPFVCDGCKKSFARKQGMKQHMLTCTEVKPLAPTYPCQYCTKIFDCDIDLSDHITTHSKDRPYTCDKCNKTFTTRPILRQHLKICFLENETVPCSLCPETFSSRSDLCKHLNIAHSSQKPFSCDRCSAKFWSKNHLKMHFRTHTGEKPFACEVCGRTFTLRSHLKTHFGTHTGEKPHSCEVCGKAFLARFCLMEHMRSHTGERPFACDKCGKAFGHKCTLRQHLRKVHIQVKPFVCARCPLSFAVESALAVHMRVHTAERPYTCDICSKTFFDVRYLKGHMQVHSTERPHACLACGNRYKRLVDLRLHIRSKCKAARAIPGMCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -