Etes003703.1
Basic Information
- Insect
- Eulithis testata
- Gene Symbol
- -
- Assembly
- GCA_947507515.1
- Location
- OX382216.1:1730167-1744741[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.13 7.8 7.4 2.6 1 23 342 364 342 364 0.98 2 21 0.0025 0.15 12.7 0.2 1 23 370 393 370 393 0.96 3 21 3.6e-05 0.0022 18.6 4.0 1 23 397 419 397 419 0.99 4 21 3.8e-05 0.0023 18.5 2.7 2 23 425 447 424 447 0.96 5 21 0.00082 0.05 14.3 1.7 1 23 452 475 452 475 0.97 6 21 4.2e-06 0.00026 21.5 3.7 1 23 482 505 482 505 0.96 7 21 0.024 1.5 9.6 0.3 1 23 511 533 511 533 0.95 8 21 2.8e-07 1.7e-05 25.2 2.1 1 23 539 561 539 561 0.99 9 21 2.4e-05 0.0015 19.1 1.8 1 23 567 589 567 589 0.97 10 21 1.4e-05 0.00084 19.9 0.9 2 23 593 614 592 614 0.96 11 21 3.1e-05 0.0019 18.7 0.3 1 23 622 644 622 644 0.97 12 21 1.5 89 4.0 1.0 3 23 656 673 655 673 0.83 13 21 0.0049 0.3 11.8 0.3 5 22 682 699 680 699 0.93 14 21 1e-05 0.00062 20.3 1.4 1 23 707 729 707 729 0.94 15 21 0.00011 0.0068 17.0 4.9 1 23 735 757 735 757 0.99 16 21 0.19 12 6.8 1.9 1 23 763 786 763 786 0.92 17 21 0.012 0.75 10.6 0.3 1 23 794 816 794 816 0.98 18 21 0.22 13 6.6 0.6 1 23 822 846 822 846 0.89 19 21 9 5.5e+02 1.6 0.2 2 23 853 874 852 874 0.87 20 21 2.3 1.4e+02 3.4 0.4 1 10 880 889 880 900 0.88 21 21 0.00014 0.0088 16.7 5.9 1 23 909 932 909 932 0.97
Sequence Information
- Coding Sequence
- ATGCAACGATTTTCAACTAGAGGCGAATTGTTCGTCAGATATCTTCAGGGGTATGAGATCGTGCAGGGTGCATACAACAAAATTCGCATTGAAAAGAAGTTATTCTTCAAAGTTCTGGATAAACACAAAAAAACTCGCGAAAGAATCGAAGAAATGCGCAAGAAAAAAATCCAAGCTATTAAAATGAGTAACGCACCTATTACACCACCGAGTCTTCGGCGTTTTGGAGGTTCACAAGTTGTGAATGAACAGCTACGGATGGATCCGGATATTGAGAAAACTGGTGTACAAATAGCCAAAGAGCTCTCTACAAAAGATGAAAGACCAGAGACAATATGCTACAACTGCCACGCACTGTTGCAAAGATACCGTAGATTTCATAACAAATCACAGAAATCTCAGGAAATATTGACCAAGCTGGCTGAAAATGGAATTGAGatATACAGAGACACAGTAGCTATACTAAATAGAAGCATTCAACATGACTACTCTATCACCGATATAGAATTATACAGTTGTTCTATAAATGAAAAAGTTAATGTGAACCAAGAAGATGTGTCCATCAAAGAAGAAAATATCACATACAATTTAAATGTTGAAAATGGAGAAACGTTAGGTTTTATGGCTGAACCAGACGCAGTGCTTTGCATGGTGTGTCTCATTGGCGATGTCAAAACATGCTCCATTAAAAACACGCCTCTTCAAGTGGTCTATGAAAAACTGACAAACAGCAAGTTAACCGCAATGAGAATTGAGACGGTTTGCTACATGTGTCACTGGCAACTGATAAAATGCCATCGATTCATTAACAAATCCAAGAAATCTGAAAGTATTCTCACGGAATTGTTACGAAATGGCATTCAGTTATCGCAGAGTACAGTAGCCTTACTCAACAGTCGATTAAAGACCAATCTGGAGTCAGCGCCTGTGGAAACTACCTCGTATCATTCTCCCGACAAACCGCGGGAAAAATCACCCGAAACTAGGGAGAATACGGACACCACCGATAGTGGAATCGACATCTTCGAATGCGATAAATGTAACTTTAAAACGAAGAGTATAAACAAATACAACAATCATTTAGAACGACACAATACAAAGTGGCAGTTCTCGTGCGATATTTGTGGATATCGGTACGAATATCCAGGTGGTCTTGGAGCTCACAAACGCCATGTCCATCGAAACAATTTCAAATGTAAAAAATGCGATTCAAAATTTGCAAATAAACGCCAGCTCAATACCCACATGTACACACATACAGCAAACAGTGACACCTGCGAGAAATGTAACATTACATTCAAGAACAGATTTAACTTACGGAAACATAACAGAAGAGTACATTCGCTGGATAGATATCCGTGCACCAAGTGTAACAACTCATTCATTACCGAGCGTTCCTTGTGTGAGCACATTATCAAAATGCACACAATTCACTTCCCATTCTATACCTGTGATGTATGCGACAGGAGTTTCTCGGACAAACATAGACTCCGAAAACATATGAAATTCGTGCACCTGAAGATAAGAAACTTTAAATGTGACATTTGCGGCAAACTATGGCCCACTAAAATGACTTTGAACGAGCATTTATTGTTTCATGCAAAAATAAGATCGTATAAGTGCTCAATTTGCCCTAAAACATACCGTTATAGAACCAATTTACAGGTCCATATGAAATCTCACAGCAAAATAAAACCATACAAGTGCAGTTATTGCAATAAAACTTTCTCATACGAAGCAACACTAAAGGAGCATAGCATTTCACACAACAAATTAATTTGTGACATTTGTAACAAAAAGTTCTCTAGTAAATGGTTTCTCAGAGAACACATGCAGAACCATATGTCAGGAATAAATAAGACCTATAATTGTGTGGAATGTGGAAAGAGTTATCCGTTGAAAGCACAGTTGAAAATCCACATGTACAGGCATAAGAATAAACCGAAAGTGGTACCGTTTGAAACGTGCCAAGTATGCAACAAACAAACCAGGTCTTTACTAGTGCACATGAGAGTACACACCGGTGAGAAGCCGTTTAGTTGCAAATGTGGAAAATCTTATACCTCAGCAGCCGGTTTAAGACAACATCAGAAAAAGAATGTTACAAACGATCGACCATACGAATGTACCATATGTGGTAAATTCTTTAAATCAAAGCGCTACCTAAAAATCCATGGGAGTTTGCACAGTGGGGTAAAACCATATTCTTGTAAAAAATGTGGTAATTCTTACACTCACAAAGTAAAACTCTATAGTCATATGAGATCACACCGAGATAAAGTACAGTTTCCATGTCAAGAATGCAGTAAAACATTTTTGGAGAAACGCAGTTTAGATAACCACGTCACAGTCTGCCACCAAGATGAGAAACAACCCACCTACGCATGCGACATGTGTCTTAAAGTGTACCTAGATAAAAAAGGATTAATATCTCATTTAAAAACTCACAGAAAAACTAAACCGTTCACATGTAACGGTTATAACTGCAAGAAGGCTTTTTCTAAATTGTCTGTATTGGGTGGCCATGCTTACAAACATAGGAAAGATAAAAAAAAAGTATGTTGGTTTTGCAAGAAAGTGTTAGACTACGCAAGTGTAGCACGCCACTATATATCTAAACATGCAGGTTTGAAGCCATACGCTTGTAATAATTGTGATGAAACATTCCTACAGTTTACGGTAGCTTATCATCACTACGTAGGATTACATAACAAAGTGAATCCTTTTTCGTGCGAGCGTTGTGATAAGCACTACACGCGAGCCAAACATCTCACAAAACATGTTAAAAAAATCCACTCTAAACAATAG
- Protein Sequence
- MQRFSTRGELFVRYLQGYEIVQGAYNKIRIEKKLFFKVLDKHKKTRERIEEMRKKKIQAIKMSNAPITPPSLRRFGGSQVVNEQLRMDPDIEKTGVQIAKELSTKDERPETICYNCHALLQRYRRFHNKSQKSQEILTKLAENGIEIYRDTVAILNRSIQHDYSITDIELYSCSINEKVNVNQEDVSIKEENITYNLNVENGETLGFMAEPDAVLCMVCLIGDVKTCSIKNTPLQVVYEKLTNSKLTAMRIETVCYMCHWQLIKCHRFINKSKKSESILTELLRNGIQLSQSTVALLNSRLKTNLESAPVETTSYHSPDKPREKSPETRENTDTTDSGIDIFECDKCNFKTKSINKYNNHLERHNTKWQFSCDICGYRYEYPGGLGAHKRHVHRNNFKCKKCDSKFANKRQLNTHMYTHTANSDTCEKCNITFKNRFNLRKHNRRVHSLDRYPCTKCNNSFITERSLCEHIIKMHTIHFPFYTCDVCDRSFSDKHRLRKHMKFVHLKIRNFKCDICGKLWPTKMTLNEHLLFHAKIRSYKCSICPKTYRYRTNLQVHMKSHSKIKPYKCSYCNKTFSYEATLKEHSISHNKLICDICNKKFSSKWFLREHMQNHMSGINKTYNCVECGKSYPLKAQLKIHMYRHKNKPKVVPFETCQVCNKQTRSLLVHMRVHTGEKPFSCKCGKSYTSAAGLRQHQKKNVTNDRPYECTICGKFFKSKRYLKIHGSLHSGVKPYSCKKCGNSYTHKVKLYSHMRSHRDKVQFPCQECSKTFLEKRSLDNHVTVCHQDEKQPTYACDMCLKVYLDKKGLISHLKTHRKTKPFTCNGYNCKKAFSKLSVLGGHAYKHRKDKKKVCWFCKKVLDYASVARHYISKHAGLKPYACNNCDETFLQFTVAYHHYVGLHNKVNPFSCERCDKHYTRAKHLTKHVKKIHSKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -