Etes003698.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eulithis testata
Gene Symbol
-
Assembly
GCA_947507515.1
Location
OX382216.1:1690839-1694137[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0034 0.21 12.3 1.0 3 23 148 168 147 168 0.97
2 20 0.0014 0.088 13.5 2.4 1 23 174 197 174 197 0.95
3 20 1.2e-05 0.00072 20.1 1.2 1 23 201 223 201 223 0.99
4 20 1.8e-05 0.0011 19.5 0.6 1 23 229 252 229 252 0.97
5 20 4.9 3e+02 2.4 4.4 1 23 257 280 257 280 0.95
6 20 0.0065 0.4 11.4 2.5 1 20 286 305 286 308 0.94
7 20 0.0074 0.45 11.3 3.9 1 23 314 336 314 336 0.97
8 20 3.6e-06 0.00022 21.7 2.4 1 23 342 364 342 364 0.98
9 20 4e-05 0.0024 18.4 0.2 1 23 370 392 370 392 0.97
10 20 0.00017 0.011 16.4 1.5 1 23 398 420 398 420 0.98
11 20 9.5e-06 0.00058 20.4 0.9 1 23 426 448 426 448 0.98
12 20 2.7e-07 1.7e-05 25.2 0.8 1 23 454 476 454 476 0.98
13 20 0.0067 0.41 11.4 1.9 1 23 482 504 482 504 0.97
14 20 4.2e-07 2.5e-05 24.6 1.9 1 23 510 532 510 532 0.98
15 20 0.00021 0.013 16.1 1.5 1 23 538 561 538 561 0.96
16 20 3.8e-05 0.0023 18.5 1.9 1 23 567 589 567 589 0.98
17 20 0.00069 0.042 14.5 3.5 1 23 595 617 595 617 0.99
18 20 0.0022 0.13 12.9 2.0 2 23 624 646 623 646 0.92
19 20 0.0042 0.26 12.0 0.1 1 23 652 674 652 674 0.97
20 20 0.00024 0.015 15.9 0.9 1 23 680 703 680 703 0.97

Sequence Information

Coding Sequence
ATGGAGCACCTTTGTAGGTCGAGCGCATGCACGCTACCTCTCAGTACAGAAGATGTGATATGTTATATCTGCCATCCGCAACTTAAACGATGTTTGAAAATAAGAAATAAGACTAAGAAATCTGAGAGTATCTTAACAGAACTGTCACATAACGGTGTCCAGCTAACGCAAAGCGTGGTCGCTATTCTGAATAATAAAAGCAAGTCTTACTACACAAGAACACCCGTCAAATATACATCTTATTGTGAAACTCAAGAAATTGAAGTAGAAATCAAAGAAGAATTATTAGAAGTGGATTATGCACTTCAATATGATACAAATAAAGGTACACATGCACATAAAGATATAAAATTGGATTTCGAGCAAGAGACGAAACCAAGTACTGCTTTTAACACTAATATCCAAAAAAATGTCCTAGTAGACATAGATATGTACGAAAATTGCGACTTTTGCAACTACAAAAGCAAATCTCCCGGCGTTCTGAAGAGGCATATGAAATTGCACGATCCTAAGAGGAAATACTCCTGCAATATCTGCGAACAACGGTATTCCACGTCAAGCCATCTGAGTTTCCACATCAAAAACGTTCATAAACGTAGATACAAATGTACCAAATGTAATGAAGTGTTCACTGGGAAATTGCTTTTAAAAATGCATATGCTAACACATTTTTCTACAAACCTATACCCTTGCGAGAAATGCAGCAAAATATTCAACAACTCGAAAAACTTGAGAGGGCATTATAATGTTGTGCACAAAAGTGAAAGACACCCATGCGACCGATGTAATTTTACGTCAGCTAGCCTAAAATGCCTACACGATCATGTACTAAGAATCCACGGCGCAAGTCGACGGTATATCTGCGATATATGTCACAGAACTCTAACAGGAAAACCCAGCTTGAAAAGACATCTATTATGCCACGCTGAAGTGAAACCATACGAATGCAAAATATGTTTTAGAACCTTCTGCACTCGGGGTATTTTAAAAACACATTACACAATTCACAGTAAAGAAAAACCGTTTAAATGCAATGATTGTGATAAAAGCTATCGAACTATTACTGATTTGAGAAAACATTCGCAAACACACACTACATTCAAACCTTATTCTTGCAAAATTTGCAATAAAGACTTCTACCGGCAAGGTGTGCTGGCAAATCATATGGGAATACACATAGGCCAGAAGCTTTACGCGTGCGATATATGCGATAGAAAATTCTTAAACAACACATACGTGAAAAAACACATGAAAACACACTCAGATGTCAAGCCGTACAATTGTGAGGTGTGCGGTAAAGACTTCAAACTCCGTGAAGGGTTAAAACATCACATGCTAGTCCACTATGGCGAGAAGATCTACACATGTGATGTGTGCGGGAAATCTTTTACTACGAAGCAGTACTTAATCGGCCATATTCGATACCACAACGGTGTTAAACCGTACGCTTGTAATATATGCGATAAATATTTCCATTCTAAACAAATCTTGGACCTTCATTTGAGGACACACACGGGGGTAAAACCCTATACATGCAACGAGTGTGGTAAAGCGTTTTCTCAAAGATGCGCGCTAAAACGTCATTTACAAGCACATTTGGGGTCTAAGCCGTACTCCTGCAATTTATGTAAAAAAACCTTCGCAGAAAAAAAGTCGTTATACTCCCACAGAATTAGTATCCACACTAAGTTAGAACGATACATCTGTGATATTTGCAATAAAGTGTTTCTCGATAAAGACAAACTCACGCGCCATATAAAACACCACAACCTAACAACTCCTTACAAATGTGATACATGCCTACGATCATTCTCAAAGCTCTGCTCTTTGACGCAACACGCGAGAATCCACCTAAGAAATGTGGAATCACGCTGCGTTTTTTGCAAGAAAAAGTTCGAATCTAAAACTAATTTGTATCGGCATAACATATCGGTTCATGGAGCTGCTAAAAGATTCGCTTGTAACATATGCGAGGAATCTTTTGATGTATTGCTAAGGTTGAACAGTCATATAAGATTGCATACGGGTGAGAAGCAGTTTTCTTGTGAGCTTTGTGTGAAAACTTATGTTGAGAGGAGAGATTTACTGCACCATATGAGAGTGGTACACAACACTAGATACTGTTTTGATTAA
Protein Sequence
MEHLCRSSACTLPLSTEDVICYICHPQLKRCLKIRNKTKKSESILTELSHNGVQLTQSVVAILNNKSKSYYTRTPVKYTSYCETQEIEVEIKEELLEVDYALQYDTNKGTHAHKDIKLDFEQETKPSTAFNTNIQKNVLVDIDMYENCDFCNYKSKSPGVLKRHMKLHDPKRKYSCNICEQRYSTSSHLSFHIKNVHKRRYKCTKCNEVFTGKLLLKMHMLTHFSTNLYPCEKCSKIFNNSKNLRGHYNVVHKSERHPCDRCNFTSASLKCLHDHVLRIHGASRRYICDICHRTLTGKPSLKRHLLCHAEVKPYECKICFRTFCTRGILKTHYTIHSKEKPFKCNDCDKSYRTITDLRKHSQTHTTFKPYSCKICNKDFYRQGVLANHMGIHIGQKLYACDICDRKFLNNTYVKKHMKTHSDVKPYNCEVCGKDFKLREGLKHHMLVHYGEKIYTCDVCGKSFTTKQYLIGHIRYHNGVKPYACNICDKYFHSKQILDLHLRTHTGVKPYTCNECGKAFSQRCALKRHLQAHLGSKPYSCNLCKKTFAEKKSLYSHRISIHTKLERYICDICNKVFLDKDKLTRHIKHHNLTTPYKCDTCLRSFSKLCSLTQHARIHLRNVESRCVFCKKKFESKTNLYRHNISVHGAAKRFACNICEESFDVLLRLNSHIRLHTGEKQFSCELCVKTYVERRDLLHHMRVVHNTRYCFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-