Egla016787.1
Basic Information
- Insect
- Eugnorisma glareosa
- Gene Symbol
- -
- Assembly
- GCA_947578425.1
- Location
- OX387984.1:6857784-6884274[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.004 0.34 12.1 0.1 1 23 208 231 208 231 0.97 2 11 0.00043 0.037 15.1 2.0 1 23 238 260 238 260 0.99 3 11 0.061 5.3 8.3 0.5 1 23 264 287 264 287 0.97 4 11 2e-05 0.0017 19.3 0.7 1 23 325 347 325 347 0.96 5 11 0.0042 0.36 12.0 1.2 3 22 359 378 358 382 0.89 6 11 5.6e-05 0.0048 17.9 0.5 1 23 423 445 423 445 0.98 7 11 0.013 1.2 10.4 0.5 2 22 454 474 453 478 0.90 8 11 8.9e-06 0.00077 20.4 0.5 1 23 486 509 486 509 0.95 9 11 0.0014 0.12 13.4 3.5 1 23 515 538 515 538 0.95 10 11 0.02 1.8 9.8 4.0 3 23 547 568 545 568 0.89 11 11 0.059 5.1 8.4 1.8 1 23 573 596 573 596 0.95
Sequence Information
- Coding Sequence
- ATGGAATCCGAAGATAATATTATTTGCTGTGGCTGCCTCAGCTCTGGCCGCAAAATGACACTCTTAGTGGAATATTGGAAAAAGGAGTCTTTTATGCAAATTATAAGCGAAATACCATTTTCAGATGGAGACAGTATGCCACTGTGGTTGTGTTGGGAATGTGACGCACAGGTGAACCGATTTAGAAAGTTCAAGCAACAAGTTAAAACCTCATACTCCTTGTTCTATGATTATGTTAAACAGAACACAAACCTCTCCAAACTTCAACCCACGCCAAGACTAACAAAAAACAAAATATACAACATTTCACTGCAAGACGACATAGAACATGAACCATTCACAATAATAAAAACAGAAGAAAACATCGCACAACCAGACTCCTTAGACAACCAAGACGAATATCACGACACCTTTGACAACAACTCAGACGACGAAAAACTAATAAACTACAAACCAAAAAAAAAAAAACATATGAACAGAATAATCGTAAGAACGAAAAGACGAAGGAAAAAGCGGAATAGGAAAGCAGTGGAGTTGTTTAAAGAAATAGAGTTGAGTAGAGAAGATTTGATGGAGGAGAGAAGAGTTGCCATGTTGAAAGACGACTATGTTAATGCTATGTTTAAGTGTGATAGATGTATTTTGTCTTTTCCTAACGCTGAGGATTTGAAGGACCATATTAGTGTAAAGCATGAATTGAACTCAAAAAACTTCAAATGCGATATATGCGAGTGTTCCTTCGCTTCTGAGGTCTCATATAACTATCATATAAACAAACATATACGAAGATACGAATGCAGAGCGTGTACTGAGCGATATGCCAATAAGAGAACTGTAGTAAAACATTATGAGACGGTGCATTATAATGGACCATCGATAGAGCTTGATGTACATATTCATCAACAAAATGGCGGGATCACGGACGATGCAGAATGCAGGAACGATAATAGTACAAAAAAATCTTCAGCAACATTTCAGTGCGAATATTGTGACAAGAGCTTCAGGTGGAAGGCATCGTTGAGGAAACACGTTGAGGCGCATCGAATAGAGAACGGACAGAAGCGGAAGCCTTATTGTGAACCTTGCAGGTTATCATTTTCAAATACATCGAATCTTCAGAAACACGTGAAAACTAGTTCTAAACATCAGATACAATTAAAACTTAGGAAACTAACAGAATCTCTGCCCGAAGACACGTCGAACCCAGAGAAGCATCAGCAGCGAATAGACCAGATCAGGAGTTCTGTCAACACCGCCAAAGAACAGTATCCCTGCCCACAATGCGACAAGAAGTTCCAATGGCGAGGCAATCTGCTGAGGCACCTTAAAagtcatgtggcgagAGCTAACGGCGAGTTGGTCTGCGAGCCGTGCAATAGAACATTCTCTTCTATTGCGACTTATAAGCAACATATGAAAATAAGTAGAAAACATGTTAGCGAGAATGATTTCAAGTACATGTGCAGTGACTGTGGCAAGCGCTTCGCTAACAAGACCCGACTAAAAGACCACGTGAACTGGGAACATCTGAAGAACTACGTACATATATGTTCTGTTTGCCAGAAGGTGTTCAAAAGCCACACGTCACTGTACCTGCACAAACAAGTGGTTCACAACAAGGACAACGCAGACCATTTGTGCGACCATTGTGGGAAAGCATTCCAGAATCAAGCTAAGCTGCGCTGCCACCAGCTAGCTATACACAGCGCTCACTCGTACGCGTGCCTCACCTGCGGCGCCCGCTTCAGCTGGCTCTCCTGCCTCAAGCGCCACAACAATAAACTGCATCAGCTCAAGTTGCCTCAAGATGCGAAGTAA
- Protein Sequence
- MESEDNIICCGCLSSGRKMTLLVEYWKKESFMQIISEIPFSDGDSMPLWLCWECDAQVNRFRKFKQQVKTSYSLFYDYVKQNTNLSKLQPTPRLTKNKIYNISLQDDIEHEPFTIIKTEENIAQPDSLDNQDEYHDTFDNNSDDEKLINYKPKKKKHMNRIIVRTKRRRKKRNRKAVELFKEIELSREDLMEERRVAMLKDDYVNAMFKCDRCILSFPNAEDLKDHISVKHELNSKNFKCDICECSFASEVSYNYHINKHIRRYECRACTERYANKRTVVKHYETVHYNGPSIELDVHIHQQNGGITDDAECRNDNSTKKSSATFQCEYCDKSFRWKASLRKHVEAHRIENGQKRKPYCEPCRLSFSNTSNLQKHVKTSSKHQIQLKLRKLTESLPEDTSNPEKHQQRIDQIRSSVNTAKEQYPCPQCDKKFQWRGNLLRHLKSHVARANGELVCEPCNRTFSSIATYKQHMKISRKHVSENDFKYMCSDCGKRFANKTRLKDHVNWEHLKNYVHICSVCQKVFKSHTSLYLHKQVVHNKDNADHLCDHCGKAFQNQAKLRCHQLAIHSAHSYACLTCGARFSWLSCLKRHNNKLHQLKLPQDAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00447540;
- 90% Identity
- iTF_01062171;
- 80% Identity
- -