Egla008868.1
Basic Information
- Insect
- Eugnorisma glareosa
- Gene Symbol
- -
- Assembly
- GCA_947578425.1
- Location
- OX387963.1:18662283-18665317[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00013 0.012 16.7 1.7 1 23 22 44 22 44 0.94 2 15 0.0022 0.19 12.9 1.5 1 23 65 87 65 87 0.92 3 15 0.0013 0.11 13.6 0.1 1 23 110 132 110 132 0.94 4 15 0.16 14 7.0 0.2 5 23 140 159 137 159 0.93 5 15 0.00024 0.021 15.9 1.9 1 23 249 271 249 271 0.97 6 15 0.00027 0.023 15.7 1.6 1 23 277 299 277 299 0.98 7 15 0.26 22 6.4 1.3 1 23 306 328 306 328 0.82 8 15 2.8e-06 0.00024 22.0 0.5 3 23 336 356 335 356 0.99 9 15 1.1e-05 0.00097 20.1 0.1 1 23 362 384 362 384 0.98 10 15 9.9e-07 8.6e-05 23.4 2.3 1 23 390 412 390 412 0.99 11 15 0.007 0.61 11.3 2.0 1 23 418 441 418 441 0.95 12 15 8.1e-06 0.0007 20.5 1.7 1 23 448 471 448 471 0.95 13 15 0.0014 0.12 13.5 3.4 2 23 483 505 483 505 0.94 14 15 0.004 0.35 12.0 0.6 2 20 509 527 508 529 0.93 15 15 0.21 18 6.7 1.3 2 23 533 554 532 554 0.93
Sequence Information
- Coding Sequence
- ATGGTGTCAGTAGACATGAAACTGGGACCAGAATTGCTGATAAAACTTGAGAAGTTGCGTGTACACAGATGCGAGAAATGCCCAGAAGTCTTTCCAAATACAAGTGACCTGATGAAACACAAGTCTTTTCATGATGAATACTTCTTGTCACACCTTGTTAGTGCATATGTACTTGTGGAAAGGGCCAAAATTTTCAAATGTGATAAATGCACTCAAAGCTTTGACAATAACAGAGAATTTATGCTTCATAAGGTTGCACACATACAAGAGTCTGTGAGAAATGAAAGAAAAAGAAACAAATTGCCGAATCCTGATATTGTGAAGCCCTTCAAGTGTCCAGATTGCAATATTAGTTATGCTGCACAAAGTACTCTTGATGCACATTCTATTCTTCACTTACCGTTCCCTCACACCTGTGAGTGTGGCATTGGATATTATAGGGAAGAAGATTTGAAAGGCCACATCAAATTGGTACATGGAACTAAGATCAAAGAAGAGGATATTTTACCACCAAAAGAGGAAAAAGTTATTCCCCAGGAAAAGACCCAAGTTATGCCCCCAAGTAAGCCTAAATCTAAATCCAAGAAGGGTCCAACAGTAAAAGAAGCAGTAAAGAGGGAAAAAACCAAACAGAAGAAATGTAGAGTGAACCTCAAAAGTGAAGATATTACCAGCAATAGACCAAAATTGGAATCGGACATACCAGACCCAGATGTAGATTTCAGAAAGACTCCTGATAATAAGTTTGAATGTCCTGAATGTAAGAAATTATTTAGTTCCAAACGTACCGTTATTACACATTACCGTTTCCACTCGGGTGAACTCCCTTTCACTTGCCATTTATGTACGAAGGCGTTCAGCCAGGCCATCATACTCAAAAAACATATAGAGAGGCACACGGCCACAGAGAAGATCCATGTGTGCAGACATTGCCCTAAAGCGTTTGCATTGGAATACTATAGGGACCGTCATGAAGGTATACACAGCGCAATTAAGCCTCATGGCTGTACATACTGTGGGAAGGCCTTTCACGATCCATCTGCACTAGTCCGTCACAAACGAATACATACGGGAGACAAACGATACCGCTGCCCGTACTGCCCTAAGGCTTTCAGTGATATCAGTGGCCTCATTGGACATAAGTTACGTCATGAGAATAGAAAGCAGTTTCAATGTGAAATTTGCTATAAGAGATTTTATAGTCGGTCTGATGTAAAGAAACACATGCGAGTACACACTCTTGATAGAAAGTATGCTTGTGATTATTGCAAAAAGTTGTTCAGTTGTAAAGGCAATTTAATAGGCCATATTCGGTTCATGCACATGTTTGAAAAGAAACAGTTTGAATGCGAGCAATGTAACAGAAAGTTTATGAGAAAGGATTATCTGAATAGACATATACAGGCGAAACACAACAAAAATAAAATCAGACGATCACATCAACGAGAATGTAATGTTTGCTTTAAACATTTCAGCAATCAAGAAAGTTTTCGGCAACACAATATGAAGATCCACTCAGGAATGCGTTGTGATGAGTGCTCTCGGTATTTTGAAAGTCCCGCCCATTTCAAAAATCACAAGCTGATTGAGAGTGTACAATGTGAAATATGTGATCTAAAGTTCAATTGTGCAAATATGAGAGAGAAACATTTAAAAGTTCACTTTTCCAAAAGCGTACAACAGATTAAAAGGGATTCTGATAGCCTGAATGAAATTTAA
- Protein Sequence
- MVSVDMKLGPELLIKLEKLRVHRCEKCPEVFPNTSDLMKHKSFHDEYFLSHLVSAYVLVERAKIFKCDKCTQSFDNNREFMLHKVAHIQESVRNERKRNKLPNPDIVKPFKCPDCNISYAAQSTLDAHSILHLPFPHTCECGIGYYREEDLKGHIKLVHGTKIKEEDILPPKEEKVIPQEKTQVMPPSKPKSKSKKGPTVKEAVKREKTKQKKCRVNLKSEDITSNRPKLESDIPDPDVDFRKTPDNKFECPECKKLFSSKRTVITHYRFHSGELPFTCHLCTKAFSQAIILKKHIERHTATEKIHVCRHCPKAFALEYYRDRHEGIHSAIKPHGCTYCGKAFHDPSALVRHKRIHTGDKRYRCPYCPKAFSDISGLIGHKLRHENRKQFQCEICYKRFYSRSDVKKHMRVHTLDRKYACDYCKKLFSCKGNLIGHIRFMHMFEKKQFECEQCNRKFMRKDYLNRHIQAKHNKNKIRRSHQRECNVCFKHFSNQESFRQHNMKIHSGMRCDECSRYFESPAHFKNHKLIESVQCEICDLKFNCANMREKHLKVHFSKSVQQIKRDSDSLNEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01064891;
- 90% Identity
- -
- 80% Identity
- -