Basic Information

Gene Symbol
SLC28A3
Assembly
GCA_947578425.1
Location
OX387985.1:9774651-9800150[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.6e-11 1.6e-08 34.8 0.0 2 43 1433 1474 1432 1476 0.94

Sequence Information

Coding Sequence
ATGGTCGTAACAAGAAGCCAATCAGACTTAGTCGAATTAGAAGAGCAGCGACGCACACAAGAAGCCGCACGCCGCCGAGAGCAAGAAAACATTGAAAAAGAGCGACTTCGACGAGTATCTTTGGATCCGCCGGCCTCACCCTTCTCAAGGCTGGCGGAAACGAGCACAGCTGGGCCCTCCGGGGTCAGAACAACGGTGACCACGCAACAACGAGCAAGGTCACCAGCAAGGTCGCTGAGGTCACACCGATCGACCACAAGCATCACGACGCGACTACGACAAGCGGAACTAAACGCCGCAGAGAGACTGGCGGTTCTACAAAGAAAACAGATGGACGTGGAAGCGGACCTAGTTAAGAAGAGACTAGCCGCAGAGGTGTCCGCCATCAACGACGAAGAAAGCATCAATGATGAGCCCATAACAGAAGAACCTCATCTAAAGGTAGACGAGTGGCTACGAACGAACCCGCTCGACTCACGGGGGGAGGAAGCAACCAAGGACGCCAGGGAGGAACCAAGACAAATAAGgttcgaggcgcccagagcacgatcgccaactccaaccagaacgagaaatagcatcgagcaactagccacgaccctcgagaagatggccagaccccgtccacgatatacggacctgccgacgttcactggagccgccagcgagtggttgcccttcaaggcagccgttcgagactcaaccaacatgtaccagattccagcagcagagaacattcacagactgaggagctgcctgaagggagaagctagggatgctgtggccgcactactacacacggccacagaccctgacataataatgaagaccttggagcagtgcttcgggcgacccgaaattatcatcgatcgggcgctcgaggatctgaagaagctccctagacctggagcatcagcagccgacctcaacagttttgctgtgaaactacagaacattatctgcgtactgaagaccatcgaccgaaggggttacctattcaatcccctgctgacgagagaagtgctggacaagctgagtccacatctccgctcccgctggtgtgactacgcctatgataacgaagggacggccgacccagaaatcgtcgtaatctcccgattcctaatgagggaggcggacagggcactacgctacacttaTGCCCCATCCACGTGCACCACCGCAAGCCAAAAGAAGGAGACACGACCAGCCGTAACCCTAAAGAAGAAAGCAACAGTTTACAACACTGTCGCCGCAGCTGATGACGAGAAGATACCATGCCCTGGGTGTGAACAAGCACACGCCCTGCCTCAGTGCCCCAAGTACAAGGCACTAACGATTCAACAACGATGGGAGTTTCTCAAACAAAAGAGAATCTGCTTCAAGTGCGCCCAAAGACAGCACCGGCGCATCGGATGCAAGTCAAGACCCTGCGGCGTGGACCAATGCCGCCGACCACATCACGCGTCCCTGCACCAGGCGCCGCCACGACCAGAGGCGGCCAAAGCAGCAGAAGCGCCGAAGGCAGAGACGCCGAAGCAGGAGGCCGTTCTATCAGTCACGCCGCAACCAGCTATGAGTCaaagaacagtactgctgaagatgtgtccgatcatcgtgtcaggaccacaaggggaggtgcagacctacgcactcctagacgaaggagcaacagtaactctcatcgacaaagagttagcaaccagcatcggggcagaagggccatcacaaccgctgcacttgaacggcgtcaacatgtcacaagaggaaaccgagagccagctcgtcacaatagacgtcagaggcgtcaacgaaaccgaaaggtacaaagtcagagccaggaccataaaagacctgcagctgcatcagcaggccatctccgaaacccttcttcaacacgagcacctgagagaccttcccagaaacgaggtgtgttacgaacgcgcacgccccgggctcttagtggggacagaccactgggagtgcatcgtctccagggaactcaggaccggcaacccgaacgagccggccgcatcgagaacgaagctgggatgggtggtgcacggaaccgcaccacgcagcgccctcattcaaaagggtagggtgctgcatatatacgagcccgaccgagagtcgaacgtgagcaatcaggagctccaccacttggtcgacgctcacttcaagatagaggctctctgcatagaagggaagccacgagtacgagaggcagatcagcgtgccatcaagatagtcgaggcgaccacaaagaagaccgaagcagggtacgaagtagggctgccgtggcgaacagacgacaccgtcatgccacccagttacagccaagcactccgtcgcctcacaacaatagagaaaaggatggacgccgatccgaaatttgccaaagagtactccagccagatcgacaacctgttgaagaaaggctacgccacaccgtgcgacggctcagaacgtgcgagcccggtgtgctggttcctgccacactttgccgtgcagaacccgaacaagcccggcaagtgcaggctagtgtttgacgcagccgcgagaagccacggaacatgcctgaacgatgaactgttggagggaccagacctgctgctgtcattaccggggatcctattccgattccgtgaaagggcagtggcagtaacagcggacattcaagagatgttcttaagaatacaaataagaacggaagaccaaccagcgcagcagttcctgtggcgaggcgacgagagagagacgcctccactcaaattcaagatgataagtatgctcttcggcgccgcgtgctccccgtacatggcccattatgttcgcaaccacaacgcagacattcacgggcaggagtacccgcgggcgctggaggcaatcaaggagagccattacatggacgacctggtggcaagctacgacgacccaacggaagcatggaagacggtggaagagacgagaacagtacacgccaacgccggcttcacattgcggggatggaacgccagcgataaaacagtgctgcgcgacataccccctgagctgtacgccactacacctacacaactggggggagagcaaccggaaagcaagatcctcggcctgttctggaacgcggaacgagatgaactcgggttcaatacatccatgaaccgagtgccaacagaggtacgagatcgagctcgcgcaccaaccaaacgcgaagccctcagcgccgtgatgtccatctacgaccctctcgggttgttgagccattacaccatccgctctaaaatcatcctgcagagcttgtggcgcctccagacaacgtgggacgaacagataccgacggaagaaaacgaactcttcgcatcgtggttggcacacctcgccgagattgccaagctccgactgccacgctgctacacgaagaagaagtacgagagcatcgacctccacgtgctatgtgacgccagcgaacaggcctacgcgaccgtggcctactggaggatcacaagcagcgacgggagtatcaccgtggtattggtggccgccaaagccaaggtggccccaagacaggcgcagaccatacctcggctcgaacttcaagcagcggtcatcggtgcaagactcgccgacacaatcagacgagaacaccgcataaagattggtcgaacgacctactggaccgactcatccaccgtggttcactggatacaccacgacatgcgacgctacacacctttcgtcgcgcacagactgggtgagatcgcggaactcacaaagaaggaagactggcgatggctgcccacagaacacaacgtggcagacgacgcaacaaggctcagcgacactcctctgagcacaacgaatcgatggttccaggggcctgcctttctgtaccaacctgaagcgcaatggcccaggatgacaacagtagaagacgaggtcgacgaggtcctgcataccagagaagaaccGAGACGAGACAGCTGGCTACCCGACCCTGCCCGCTTCTCAAAATACGAAGTCCTGGTGAGAACCACTGCACGGGCACTCGCCTTCATTGACATTTGCCGACGTAAGGCAACCAACATGGAACATCGGCACATTCAGCGCGCCGAGACGGAACTAATCCGGCATGCGCAAGAAGAAAGCTTCGACGAAGAAATGAAAAGGATCAAGTCGGCTCGAGCATTAACTAAGACGAGCCGGCTGTACCGCctagatccgattatagaagatggactcctgaggGTCGGGACATCAAAAAAGAAGACTAGCAGGCGTCTATTTGACTGTAGGGAAGATCATATAATTAAAGCCTTAGAAGAAATAAAAAACAAAACAATGGGTATAAGGGAAGCATGTCGGATTTATGGCGTACCTAAAACAACCGTGCATGATCGGCTTTCGGGTAAAGTTGCTGTAAACAAGATGCCTAAAGTAGGTCCTGACCCTGTTTTAGGACGTGAGGGTGAAGAAAAGTTAAAAAACTGGGTATTAGATATGGCGAAATGTGGGTTTCCTATAAATAAAAAAGAACTTTTTGAAAGTGTGTCGAAAATTATTCGTGACACTGGTATGAAAAACCCATTTAAGGATGGAATACCAGGGGACACATGGTACCAGTCATTTTTAAGACGTCACCCTGAGATCAGTGTAAGGGAGGCAGAGGGAATCAATAATGCAAGAGCAGCAGTAACCGAGACCCGAGTAAGACTATGGTTTAAAGATCTCAGGGAGCATATACAATCCATAGACGCACTGGATATATTTGAAGATCCAGATAGAATTTTCAACGGGGATGAGACAGGTTTTTCTTTGTGCCCAAAAAGTGGTACAATCCTGGCCTCCTACATCGGTTTCGGCGCGGAACCAGCTCACCTGGTGACAGCCAGTGTCATGTCGGCGCCAGCCGCCATCTGCTACGCCAAGCTCCTGATGCCTGAGACGAAGAGGTCGCTGACTACGGTGGATAATATCCAGCCTGTGGTGTGCGAAGACCAATCAGTTCTTTCCGCGGCCACTAGAGGCGCCACCAACGGCATAGCCTTGATCCTGAACGTTGTAGCCAACATTATAGCCTTCGTGTCGTTCATAGCCTTTGTCAACGGAGCGCTGGGCTATTTCGGAGGAATGCTGGGCGATCCTGATATCAACTTGGAATGGATTTTTGGAAAGGTGTTCATTCCCTTGTCATGGGTCATGGGAGTGCCATGGGAGGAGTGCGAGCTCGTGGGCTCTCTGATAGGCCTGAAGACAGTCGTCAACGAGTTCGTGGCCTATCAGAGAATGGGGGAGATGAAGAGGGAAGGACTGTTATCGCCCAGAGCCGAGCTGATAGCGACATACTCTCTGTGCGGGTTCACGAACCCCGCCTCAGCCGGCATCATGATTGGAGCCATCGCGGCCATAGCGCCTAACCAGAGAGAAGTACTGGCCAGTATAGCTGTGAGAGCATTCTTCGCGGGATGCGGAATTTGTTTCATGACTGCGTGCATAGCAGGTCTACTGATGCCTGATGACGCGTTCGTATAA
Protein Sequence
MVVTRSQSDLVELEEQRRTQEAARRREQENIEKERLRRVSLDPPASPFSRLAETSTAGPSGVRTTVTTQQRARSPARSLRSHRSTTSITTRLRQAELNAAERLAVLQRKQMDVEADLVKKRLAAEVSAINDEESINDEPITEEPHLKVDEWLRTNPLDSRGEEATKDAREEPRQIRFEAPRARSPTPTRTRNSIEQLATTLEKMARPRPRYTDLPTFTGAASEWLPFKAAVRDSTNMYQIPAAENIHRLRSCLKGEARDAVAALLHTATDPDIIMKTLEQCFGRPEIIIDRALEDLKKLPRPGASAADLNSFAVKLQNIICVLKTIDRRGYLFNPLLTREVLDKLSPHLRSRWCDYAYDNEGTADPEIVVISRFLMREADRALRYTYAPSTCTTASQKKETRPAVTLKKKATVYNTVAAADDEKIPCPGCEQAHALPQCPKYKALTIQQRWEFLKQKRICFKCAQRQHRRIGCKSRPCGVDQCRRPHHASLHQAPPRPEAAKAAEAPKAETPKQEAVLSVTPQPAMSQRTVLLKMCPIIVSGPQGEVQTYALLDEGATVTLIDKELATSIGAEGPSQPLHLNGVNMSQEETESQLVTIDVRGVNETERYKVRARTIKDLQLHQQAISETLLQHEHLRDLPRNEVCYERARPGLLVGTDHWECIVSRELRTGNPNEPAASRTKLGWVVHGTAPRSALIQKGRVLHIYEPDRESNVSNQELHHLVDAHFKIEALCIEGKPRVREADQRAIKIVEATTKKTEAGYEVGLPWRTDDTVMPPSYSQALRRLTTIEKRMDADPKFAKEYSSQIDNLLKKGYATPCDGSERASPVCWFLPHFAVQNPNKPGKCRLVFDAAARSHGTCLNDELLEGPDLLLSLPGILFRFRERAVAVTADIQEMFLRIQIRTEDQPAQQFLWRGDERETPPLKFKMISMLFGAACSPYMAHYVRNHNADIHGQEYPRALEAIKESHYMDDLVASYDDPTEAWKTVEETRTVHANAGFTLRGWNASDKTVLRDIPPELYATTPTQLGGEQPESKILGLFWNAERDELGFNTSMNRVPTEVRDRARAPTKREALSAVMSIYDPLGLLSHYTIRSKIILQSLWRLQTTWDEQIPTEENELFASWLAHLAEIAKLRLPRCYTKKKYESIDLHVLCDASEQAYATVAYWRITSSDGSITVVLVAAKAKVAPRQAQTIPRLELQAAVIGARLADTIRREHRIKIGRTTYWTDSSTVVHWIHHDMRRYTPFVAHRLGEIAELTKKEDWRWLPTEHNVADDATRLSDTPLSTTNRWFQGPAFLYQPEAQWPRMTTVEDEVDEVLHTREEPRRDSWLPDPARFSKYEVLVRTTARALAFIDICRRKATNMEHRHIQRAETELIRHAQEESFDEEMKRIKSARALTKTSRLYRLDPIIEDGLLRVGTSKKKTSRRLFDCREDHIIKALEEIKNKTMGIREACRIYGVPKTTVHDRLSGKVAVNKMPKVGPDPVLGREGEEKLKNWVLDMAKCGFPINKKELFESVSKIIRDTGMKNPFKDGIPGDTWYQSFLRRHPEISVREAEGINNARAAVTETRVRLWFKDLREHIQSIDALDIFEDPDRIFNGDETGFSLCPKSGTILASYIGFGAEPAHLVTASVMSAPAAICYAKLLMPETKRSLTTVDNIQPVVCEDQSVLSAATRGATNGIALILNVVANIIAFVSFIAFVNGALGYFGGMLGDPDINLEWIFGKVFIPLSWVMGVPWEECELVGSLIGLKTVVNEFVAYQRMGEMKREGLLSPRAELIATYSLCGFTNPASAGIMIGAIAAIAPNQREVLASIAVRAFFAGCGICFMTACIAGLLMPDDAFV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-