Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.00043 0.26 11.7 0.0 18 39 47 68 45 72 0.87

2 3 5.1e-13 3.1e-10 40.2 0.0 2 43 95 136 94 138 0.94

3 3 3.1 1.8e+03 -0.7 0.0 27 42 211 227 211 229 0.89

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.00043	0.26	11.7	18	39	47	68	45	72	0.87
2	3	5.1e-13	3.1e-10	40.2	2	43	95	136	94	138	0.94
3	3	3.1	1.8e+03	-0.7	27	42	211	227	211	229	0.89

Coding Sequence: ATGCTGGCTGCTACGCAGAGACTGCGCGATCATCGGCAGTTCGACGTTCCCCAGCATGCTGAAGGTCGCGGCAACGAAGGCCTGCCTGTCGCCTTGCAGGAAGATATCCTGGAATTCTTCCGGCGAGAGCCACGTGCAAGCACGCGGGAGGCTGGTCGACGGTTTGGAGTGCACCACTCCACAGTGTGGCGGCTACTGCACAAAGAAATGCAGCATCCTTTTCATTACCGCAAGGTCGGGACATCAAAAAAGAAGACTAGCAGGCGTCTATTTGACTATAGGGAAGATCATATAATTAAAGCCTTAGAAGAAATAAAAAACAAAAAAATGGGTATAAGGGAAGCATGTCGGATTTATGGCGTACCTAAAACAACCGTGCATGATCGGCTTTCGGGTAAAGTTGCTGTAAACAAGATGCCTAAAGTAGGTCCTGACCCTGTTTTAGGACGTGAGGGTGAAGAAAAGTTAAAAAACTGGGTATTAGATATGGCAAAATGTGGGTTCCCTATAAATAAAAAAGAACTTTTTGAAAGTGTGTCGAAAATTATTCGTGACACCAGTGTCACGAATAATTTTCGACACACTTTCAAAAAGTTCTTTCATACCAGTATGAAAAACCCATTTAAGGATGGAATACCAGGGGACACATGGTACCAGTCATTTTTAAGACGTCACCCTGAGATCAGTGTAAGGGAGGCAGAGGGAATCAATAATGCAAGAGCAGCAGTAACCGAGACCCGAGTAAGACTATGGTTTAAAGATCTCAAGGAGCATATACAATCCATAGACGCACTGGATATATTTGAAGATCCAGATAGAATTTTCAACGGGGATGAGACAGGTTTTTCTTTGTGCCCAAAAAGTGGTAAGATTTTAGGACCTAGAGGGTACAAAAACCTCTACATAATAAAAAAGAGTAACGATAAAGATAATGTCACCGTATTGGTGGTATTCACAGTGAGTGAAAAAATATGTCCCCCTTTAATAGTATTTCAATTTTATAATATTTAA
Protein Sequence: MLAATQRLRDHRQFDVPQHAEGRGNEGLPVALQEDILEFFRREPRASTREAGRRFGVHHSTVWRLLHKEMQHPFHYRKVGTSKKKTSRRLFDYREDHIIKALEEIKNKKMGIREACRIYGVPKTTVHDRLSGKVAVNKMPKVGPDPVLGREGEEKLKNWVLDMAKCGFPINKKELFESVSKIIRDTSVTNNFRHTFKKFFHTSMKNPFKDGIPGDTWYQSFLRRHPEISVREAEGINNARAAVTETRVRLWFKDLKEHIQSIDALDIFEDPDRIFNGDETGFSLCPKSGKILGPRGYKNLYIIKKSNDKDNVTVLVVFTVSEKICPPLIVFQFYNI

Sequence clustering based on sequence similarity using MMseqs2