Edil007703.1
Basic Information
- Insect
- Euglossa dilemma
- Gene Symbol
- -
- Assembly
- GCA_002201625.1
- Location
- NIJG01000161.1:6752948-6756292[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.57 42 4.6 0.5 2 19 531 548 530 549 0.82 2 10 0.31 23 5.5 1.6 1 23 558 581 558 581 0.98 3 10 0.00063 0.047 13.9 0.3 1 23 587 609 587 609 0.98 4 10 0.62 46 4.5 0.8 1 23 615 637 615 637 0.87 5 10 2.1e-05 0.0015 18.6 0.4 3 23 645 665 643 665 0.96 6 10 0.08 6 7.3 0.3 2 23 672 694 671 694 0.95 7 10 7.5e-05 0.0056 16.8 3.2 1 23 698 720 698 720 0.98 8 10 0.011 0.85 10.0 0.7 1 23 725 747 725 747 0.98 9 10 1.6e-08 1.2e-06 28.4 0.5 1 23 753 775 753 775 0.98 10 10 1.1e-05 0.00084 19.4 1.1 1 21 780 800 780 801 0.94
Sequence Information
- Coding Sequence
- TTGTTTCAGGTAAAAGAAAACGATGGACTGCCGCAAATTGTTTGTATGCGATGTTTGGGCACGCTGGAATTTCTATGCGATTTTTACGAACGTTGTCATCTTACCCAAAAGGAACTTTTGGAGGCTAGTCAAAATGCAATGGATGAGAAGACACAGCAAGACATCGATGAAGAATCAAATAAAGAAAATGCTATTCCATCAGTAAATGAGACTAAACGCAAGACAAAAGTTTTATCACCTGATAATTCAAAGAGTACAAAAAATTATCTGTCCGAAAATAATGCATCATATTATAGAACTGAAATAAAAGAAGAAAATGCTAATCACATTAATAACAATACCTCTACCAATGATGTTCACTTGGTAACACAAACTACAGTACAACTAAATAAGAGACTTTCTAAAAACCACTCTGTAGTGGATAATGAAAATTTAAATAGAAAAATATTAAAAAATGATCAAAATAATACTAATAATTTAAGATGTAAAAAAAATGTAATAATAAAAAAGAATAATATTTTGAAAAAGACTACAATTCGTACAAGATCAACAAATGACTTGAATTCATCACAAAAAGACAAGACTAACATTAGTATAAATTTAGATTTGCCTGTTCGACGCAAGAGAGGTCGGAAAAGCAAATTGGAAAAGATGAGAGAAATGAGTTTAGCTGCAAGATTTAAGAAGGACATCCAAACTGATTTAAGTGACAGAATGACTGATAATTTTAACAATGAATACAAAAGGCACTGTTTGCGTTCAATTTGTACTAATAGTAAGTCTAATAGTATAAGTAATAATACTGCAATTTCATCAAAACCACAAGTCAGTCAAACAGTAGAAAAGGAAAAGGTGGCAGTGGTGAACACATCATTAGATTTAGATTATACCAAAGGCAATGAAACTAATAGTATGTACAAAGACAAATCTGCAAAGAATAAAGCAATATCAGTTATTGTGAAGCAAGAGAAAGAGGAGACAGAAAATACTTCTACTAAACAAAATGAAAAGTCAAACAAACTTATTTGGATTTCTAGTGAGATACTGATACAGGAGGAGAAAAATTCAATGGAGAATCAAGATCAAAGTCAAATGAATCAAAAAAAGATGGATTTAATACAGACAACCTCTTCAAAGGCAGAGGAAAGTAAAAATTCTGAAAGTACTAAGACTAATTCAACAGGACAAAATTCTAACGTAGAAACTCACTCTACCTCTATTGAGTTACATACAAAAATATTTACAGAACAAAATCGCATGACAGTTATAAAATCTTCACAATCTAATGAAATATCAAATCCAAAGTTGATGCAAGAAGATTCTACAGAATTGTGCATTGCAGAGGATGTAAGAAACCAAAGTACTAAAAGTGAAGTAAAATGCAGCCTTAGTGAACAATCACAATCTCAACAATTGAATCAAAATAGTTTTGATGATACTAAGGGTAAAGATAGATCATTTGTTAAAATCTCTGATTTGATAAGTGATGAACAAAAACGGACTATTGAAACTTATTACACGGTAAATATGTCGACTGTAAACTCAGAAGAAGTACAGAAAAATATAACAATAATTAATAAAAAAAATATACGCTGTAATATTTGTGGTACATTTTATCCTAGAATGGATAAATGTCAGGTACATATCTGGGGACATTTACAAATGAAACCCTATCAATGTAAGGCTTGTGATTTTGCCACAGTTACTGTTAGCAATGTTCGTTGCCACATCAGAAAAAGTCATCTAAAGATTAAACCATATGCATGCCATCTTTGTGAAAAGCGATATGTAACTGGTATTTTACTAGAAGAGCATATTAATACTCATACAGGTGCCCGTCCATATAAATGCAAGCTCTGTGATTTTGCAAGTTCTAATAGACAAATACTAAGTTACCACAATGCCACACATAAACCAATGAAGGATATTAATTGTAAACTTTGTGGCAAAGAGTTTTATTCAAAAAATAGATTGCGTGCACATATGATTGTACACAATAAGGATAAAGCTGTTATGTGTAAATTATGTTCTGCTTATTTATCTAATGCAGAGGCATTAGAAACACATCATAGAAACGTTCACATGCACGATTATATATGTAATATATGTGGCAAACACCTTAAATCAAGAAAAGCTTTGCATAATCATCAGAATGTACATGCTGTTGCAAAATATAAATGCACTCTATGCCCAAATGTATATAAGAGCAGTCAAATATTAAAAGAACATCTTCTAAAACATGAAGGTATTAGAAAGTATAAGTGTAATGTTTGTGGAAAATCATTTGGTCAGAAGTCTCATTTAGCTGCTCATATGGCAGTACATAGCAAAATTAGATTCCATTGCCCAGGATGTGATAAAGCTTTTAATAGACAAGATAATATGAAGTTACACACTAAACGATGTAAACCATTTTTGGCAGATCCACAATTAAAAAGTTTATTAAGTAAAAGAGAAAGAACTATATCGTTTAATAATATAGCAGAGTTAACGGCAGAGTTGAAGAACGGAAATATGACAAACTCCGTATCTCAAGATTCTCTAAAAGATCAGAATAATGAGACGTTAGCAAAGACTGTGGAAGAACAAAAAAAGACTGCAATAAATCTCTGCAAATTAGGACTAAACATCTCTTGCATTGAACCAACAGATAAAACGTGGAATTCTGATAACATATACAATGAGAAAGAA
- Protein Sequence
- LFQVKENDGLPQIVCMRCLGTLEFLCDFYERCHLTQKELLEASQNAMDEKTQQDIDEESNKENAIPSVNETKRKTKVLSPDNSKSTKNYLSENNASYYRTEIKEENANHINNNTSTNDVHLVTQTTVQLNKRLSKNHSVVDNENLNRKILKNDQNNTNNLRCKKNVIIKKNNILKKTTIRTRSTNDLNSSQKDKTNISINLDLPVRRKRGRKSKLEKMREMSLAARFKKDIQTDLSDRMTDNFNNEYKRHCLRSICTNSKSNSISNNTAISSKPQVSQTVEKEKVAVVNTSLDLDYTKGNETNSMYKDKSAKNKAISVIVKQEKEETENTSTKQNEKSNKLIWISSEILIQEEKNSMENQDQSQMNQKKMDLIQTTSSKAEESKNSESTKTNSTGQNSNVETHSTSIELHTKIFTEQNRMTVIKSSQSNEISNPKLMQEDSTELCIAEDVRNQSTKSEVKCSLSEQSQSQQLNQNSFDDTKGKDRSFVKISDLISDEQKRTIETYYTVNMSTVNSEEVQKNITIINKKNIRCNICGTFYPRMDKCQVHIWGHLQMKPYQCKACDFATVTVSNVRCHIRKSHLKIKPYACHLCEKRYVTGILLEEHINTHTGARPYKCKLCDFASSNRQILSYHNATHKPMKDINCKLCGKEFYSKNRLRAHMIVHNKDKAVMCKLCSAYLSNAEALETHHRNVHMHDYICNICGKHLKSRKALHNHQNVHAVAKYKCTLCPNVYKSSQILKEHLLKHEGIRKYKCNVCGKSFGQKSHLAAHMAVHSKIRFHCPGCDKAFNRQDNMKLHTKRCKPFLADPQLKSLLSKRERTISFNNIAELTAELKNGNMTNSVSQDSLKDQNNETLAKTVEEQKKTAINLCKLGLNISCIEPTDKTWNSDNIYNEKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00684363;
- 90% Identity
- -
- 80% Identity
- -