Emex004469.1
Basic Information
- Insect
- Eufriesea mexicana
- Gene Symbol
- -
- Assembly
- GCA_001483705.1
- Location
- NW:42929-44930[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.21 11 5.8 1.2 1 11 252 262 252 266 0.84 2 8 2.1e-05 0.0011 18.4 4.3 2 23 274 295 274 295 0.98 3 8 0.0011 0.057 13.1 1.4 1 23 296 318 296 318 0.98 4 8 0.00075 0.04 13.6 1.6 1 23 327 350 327 350 0.96 5 8 0.00032 0.017 14.7 0.9 1 23 376 398 376 398 0.98 6 8 0.008 0.43 10.3 0.3 1 23 435 457 435 457 0.98 7 8 3.2e-05 0.0017 17.9 2.7 2 23 467 488 467 488 0.98 8 8 2e-06 0.00011 21.7 1.7 1 23 493 515 493 515 0.98
Sequence Information
- Coding Sequence
- ATGTTAGCCTGTGAAGCACACGGCTGTCTTTCAGATGAAAATACGAAAGTCGacggaaaaaatattttattgtatcgTTTTCCTGAAGAAGTAGCTCAAAGGAATGAATGGTTCAAGAATTGTCAATTGAATGAAAACATTGAAAATGATAAACCACTTTACCTCTGTGAATTGCACTTTGATAAAACAAGTTTTAATGATTCAAAAGAGTTAATTCCTAATGCTATTCCAACTATTTTTGACAAAGTAGATGaagGTCAAATTACAGATGGTCAAAGAAAACGTAAGGCTGAAAGCGAACTCGAAGTTGATTCACCTAAGGCTCCACTGGTGAAGCAGAAAAAAGTGGATAGTGATTCACATAGTTTAGTGACTCCACCACAAAGTCCTTATATGCAattggtagaaaatGATGATAAAATGAAtggagaaaataaaatggaTATACCGTCTGATCATGAAGTTTCATTAAATGGATCTGCTCATATGAAACCTGAATTATATCAAGAAGCAGTAATAGGAAAAAAACTATATCGTTTAACAATACAAATAGATAAAATATATGGAAAACCATGTCCAAAATCAAAAAAACTTAGAGTACTGGCACAATTAATAAAAGGAAGCCaacaatttaatgaaaatatgaataatataattcaaGGAAATCAGTCTTTAGAAAAGGTTAATAGAAAGGCTATTTGTGCAAAAGGTGGATGTAAGTTAAAGAAGTCAATATATGATTCAAAGCCAGCATTTCAATGTGAACACTGTGATAAATATTATGTAATGAAAAAAAGTGATAGCCAAGAAGAGAAGAATACTTGTACTATATGTCATAAGAGTTTCTCATCTTCACAATCCTTGTACCTTCATACTAAAACTCATTTTGTATGTGATGTGTGCCAAACTGAATGTAGTTCACAAGTGACTTATGATAAGCATATAAGATTACATGTtagtacagatccattatatccATATAAGTGTCACCAGTGTACAGAAACATTTGAACTTAAGGAAGACGTGAGACAGCATTATTTAATTGTCCATCCTACTATAAAATTGCAAAGCACTATTCTACAAGTGACTGCACCATCTTTGACACAGCAAATACCTCAACAAGATTACCGTTGTGTCAGTTGTAATATTACATTTAGAAATGAACAAGCCTATAGGAATCACATAAGTTCGCATAAAAAGAAAGAAGGCTTGAGGTGCAGTATTAGTGATAGTACCAATAATATATTTCCAGTACCTAATCCATTAACTGGTAGTCAAATAGGTATTCTTCGAGCTGTAAAATTCAGTTGTAGAGTGTGTTCTATGGAATTTGATAATGTGGGCGAAGTTGATAAACATACTAGGACTCATTTAGAAGAAGATAGCGAGGAGGAACGCAAGTGCAATATCTGTAAAAAGTTATTTAAAACGAGCACTCAACTCAACGAACATTTAAAGTACCACTTGTCCCGTGCACACTCTTGTCCCGTATGTTCCAAAGCTTTTATTAACAGAACTAcattaaaaatacatttaaaaacACACGGTGAATCATAg
- Protein Sequence
- MLACEAHGCLSDENTKVDGKNILLYRFPEEVAQRNEWFKNCQLNENIENDKPLYLCELHFDKTSFNDSKELIPNAIPTIFDKVDEGQITDGQRKRKAESELEVDSPKAPLVKQKKVDSDSHSLVTPPQSPYMQLVENDDKMNGENKMDIPSDHEVSLNGSAHMKPELYQEAVIGKKLYRLTIQIDKIYGKPCPKSKKLRVLAQLIKGSQQFNENMNNIIQGNQSLEKVNRKAICAKGGCKLKKSIYDSKPAFQCEHCDKYYVMKKSDSQEEKNTCTICHKSFSSSQSLYLHTKTHFVCDVCQTECSSQVTYDKHIRLHVSTDPLYPYKCHQCTETFELKEDVRQHYLIVHPTIKLQSTILQVTAPSLTQQIPQQDYRCVSCNITFRNEQAYRNHISSHKKKEGLRCSISDSTNNIFPVPNPLTGSQIGILRAVKFSCRVCSMEFDNVGEVDKHTRTHLEEDSEEERKCNICKKLFKTSTQLNEHLKYHLSRAHSCPVCSKAFINRTTLKIHLKTHGES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01419040;
- 90% Identity
- iTF_00685021;
- 80% Identity
- iTF_00684206;