Emex007709.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eufriesea mexicana
Gene Symbol
-
Assembly
GCA_001483705.1
Location
NW:18965-26062[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.0035 0.19 11.4 0.6 1 23 547 570 547 570 0.96
2 9 7.2e-06 0.00039 19.9 0.5 1 23 576 598 576 598 0.99
3 9 4.2e-07 2.3e-05 23.8 0.7 1 23 604 626 604 626 0.99
4 9 0.045 2.4 8.0 0.7 1 23 632 654 632 654 0.98
5 9 3.1e-06 0.00017 21.1 0.2 1 20 660 679 660 680 0.96
6 9 0.035 1.9 8.3 2.4 1 23 689 709 689 709 0.94
7 9 1.5e-06 8.1e-05 22.0 0.5 3 23 717 737 716 737 0.98
8 9 0.00015 0.0081 15.7 1.4 1 23 743 765 743 765 0.98
9 9 0.0029 0.16 11.7 2.6 1 21 771 791 771 794 0.96

Sequence Information

Coding Sequence
ATGACCACGCTCGATATGCAGCAAACCGTTTTAAGTCAAGTAGCGGGAAACGAACAACCGCAGCAAGAAGAAATTCAGCTGACGGAATTATTACCGGTGAAACAGTCGCGAATCAGACAGAATGAAATCTTTAAACACATTGATACAAATACCGATGCGACCGATGCTTTAAAAATACTTCGTAGTTTCACTATTGTTGATAGTTGTAATGTTCATGAACACGAACTTCATTCACCAAGTTTTCCTCTTGATAGAAAACCTGTGCACTGTGAACAACGGAAGCAAAACAATAGTAAACGGTGTCAAGGGGAGaaattacgaaataaaattCCCGAATATGACAAAAATGTGGTTGATAGGACCGAAAtcgggaaagagagaaaaaaaaatgataatCGTCGATTTGAGAATGAACCAAAGacagagaaaagaaaatataaatatatcgataaaATGTCAATGTCTGGTCGTGTAGCAAAATCCTTGAAGAAGAGTACAATCATCGACAcagtagaaaataataaagaacaagaagataaaataaaaagacacGGAGAATTAAAAGGTCGACAAAAGGTCAGAGAAAATGCATTCCTTGAgcatgaaaaaagaaattacttaACCGAATATAACCAACAGGTAGAATCGCCTTTTTATCTCGATCTTGATAAGAATAACCATTTAAATGATGAGATTTACGTGTTTCATCATGACTTAATAAGTGAGGAACAAAGACGAAATACACACTTAGGAAACctagaagaaaaatatgaagaaaGCGAGGACTACAGAACAACTACGGATGGAGTATTATTCAATCAAATAGCAATTTCTTCTGAAACAACGATTGACAATAACATCAATGAAGCTGATGAAGGACTTACCGTCGTTACTATCGAACAAAATTGTCCAATTGATACGAAAGTGACAACAAATTCGAAACTACTGTTCGAGAATTCGGTGAAAGAATCAAAAATAAACTTCTGTACAACGACTAGTTATCTTGGAAATAAAAGTGAgaataataatactattggACCAAATGGATGTAAAATTAAAGAGAATTATACCGATTCATTGTTCAAACCAGATGACTGTGATAACATAATTGTCGTCGATTCGTCATCATCGTCCTCATCGTCCTCGTCATCAtcttcatcgtcatcgtcatcgtcatcgtcgacATTGTCATCATCATCGTCAACGTCATCGTTATCCACATCATCGTCGCCTTCGTCAtcttcatcgtcatcgtcaacgtcgtcatcgtcatcatcatcgtcgtcgtcgtcgtcgtcttcgtcgtcttcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcatcgtcgtcatcgtcatcgtccacttcgtcgtcgtcgtcatcatcgtcgtcgtcatcgtcgtcgtcgtcgtcatcatcgtcatcgtcgtcatcatcgtcgtcgtcgtcaacGTCATCGCCGTCATCGTTACCTTCGTTGATGTTACCATCATGCACATATTTACGAAAAAAGAATATATGTAACATTAAAGATGGACGAAGTATCAATGAAACTAATATCGCACATGATACAGAGGAGAAGCAAGAGAATCAGCAAAAAAGATATTGTTGCGTAGTGTGCGAGGCGCGATTTAAAGGTAGCGGTGGTCTTCGTAATCATTATAAGATCGTACATGGAGCAGGGCCGGTTTTCAAATGTGACGAGTGCGGTAAAGAATTCCCATTAAAAGAAAGATTAAAATTACACGTGAGAACACATACCGGTTTTAAACCTTATAAATGTTCAGAGTGCGACAAAAGTTTCGCTAGAGGAGGGCAATTGGTGCAGCATCGACGTACACACAGTCAGGTAAAACCATATCGTTGTGGCTTATGTTCCGGCACGTTTACTTGTGCTGCAAATTTAGCATTGCATGTAAAACGACATAATGGTCAAAAGGATCACAAATGTGAAATTTGTGGCCGCGCGTTCGTTCGACGAGACGCGCTTAAGAAGCATCTCGAATGTCTTCACAGAGACGTGAAATCTTTTCTCTGCGTGATTTGCAACAAAACCTTCAAAGGCCATCTTCCTCAACATATGAGGACACATGCACGTGACAGACCACATGGTTGTGCCACGTGTGGGCAAAGGTTCGCTCAAAAATCTCAACTGACTGTACATCAGAGAACGCATTCTGGGCAAAGACCGTTTAGATGTTTGGTTTGTTGGCAGGCATTTGCACATTCGACGGCACTTAAACTACATACGAGAAGGCACACCGGCGAAAGGCCGTTTAAGTGTGCCGAATGTAATGCTGGTTTCACCCAACTACCCCATTGGAAAAAGCACATGAAATGTATCCATGGCAGGAATGAACCTTATGCTTGCAAGAAATGTAAAAGCTTTTTTAGAATTAAAAACGATCTGGAATGTCACGAGAAAACTTGTCATCCTGAGTGTGAAAGCGAAAACAATATTTCGAATACTCGAACCTCGGATTCAGTAACAGCCACTATGATGTCGGCATCAATTTCGGTGACCTTACAGCCAACAGCATCATTACTTTCCAACGAAATAATCACTGACAAATCTACGTTGTCGCCCTCTAAATATAGAGTAATGACTGTCGAGAGAATGAGATTATTACTCGCTGTACTTCTTAAGAGAATCAGTAAACAAGAAAGGCTCGACGAATTAGGTTTTGGTAAACGATTAATTGACGAAGTTCTTTACGATTCTCTGATATCTGCTGGCAAAGATCCAATCACGAGCAATGGACTTTCAGAACTTGAAACTCTCACCAAAAACCTCGAGATATTTCTAAAATGGACCGTACCCAAAGAACATTGGGAAAATTTTCGCAGATTAAATAAGACTCCTGAAGATATCCTGGAAACGCTGACTGCTACTTAA
Protein Sequence
MTTLDMQQTVLSQVAGNEQPQQEEIQLTELLPVKQSRIRQNEIFKHIDTNTDATDALKILRSFTIVDSCNVHEHELHSPSFPLDRKPVHCEQRKQNNSKRCQGEKLRNKIPEYDKNVVDRTEIGKERKKNDNRRFENEPKTEKRKYKYIDKMSMSGRVAKSLKKSTIIDTVENNKEQEDKIKRHGELKGRQKVRENAFLEHEKRNYLTEYNQQVESPFYLDLDKNNHLNDEIYVFHHDLISEEQRRNTHLGNLEEKYEESEDYRTTTDGVLFNQIAISSETTIDNNINEADEGLTVVTIEQNCPIDTKVTTNSKLLFENSVKESKINFCTTTSYLGNKSENNNTIGPNGCKIKENYTDSLFKPDDCDNIIVVDSSSSSSSSSSSSSSSSSSSSSTLSSSSSTSSLSTSSSPSSSSSSSSTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSPSSLPSLMLPSCTYLRKKNICNIKDGRSINETNIAHDTEEKQENQQKRYCCVVCEARFKGSGGLRNHYKIVHGAGPVFKCDECGKEFPLKERLKLHVRTHTGFKPYKCSECDKSFARGGQLVQHRRTHSQVKPYRCGLCSGTFTCAANLALHVKRHNGQKDHKCEICGRAFVRRDALKKHLECLHRDVKSFLCVICNKTFKGHLPQHMRTHARDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCAECNAGFTQLPHWKKHMKCIHGRNEPYACKKCKSFFRIKNDLECHEKTCHPECESENNISNTRTSDSVTATMMSASISVTLQPTASLLSNEIITDKSTLSPSKYRVMTVERMRLLLAVLLKRISKQERLDELGFGKRLIDEVLYDSLISAGKDPITSNGLSELETLTKNLEIFLKWTVPKEHWENFRRLNKTPEDILETLTAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00684965;
90% Identity
-
80% Identity
-