Emex005713.1
Basic Information
- Insect
- Eufriesea mexicana
- Gene Symbol
- Prdm15
- Assembly
- GCA_001483705.1
- Location
- NW:517711-520401[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2e-05 0.0011 18.5 3.0 1 23 253 275 253 275 0.98 2 12 0.0042 0.23 11.2 3.9 1 23 280 302 280 302 0.96 3 12 0.00064 0.035 13.8 1.4 3 23 313 333 312 333 0.98 4 12 5.8e-06 0.00031 20.2 2.6 1 23 427 449 427 449 0.99 5 12 0.0024 0.13 11.9 1.9 1 23 454 478 454 478 0.90 6 12 8.6e-07 4.7e-05 22.8 1.0 1 23 517 540 517 540 0.96 7 12 3.8e-07 2.1e-05 23.9 0.8 1 23 573 595 573 595 0.99 8 12 0.00013 0.007 15.9 4.0 1 23 609 631 609 631 0.96 9 12 0.00012 0.0066 16.0 4.7 1 23 637 659 637 659 0.98 10 12 0.0011 0.059 13.0 3.2 1 23 665 687 665 687 0.98 11 12 7.6e-05 0.0041 16.7 6.6 1 23 693 715 693 715 0.97 12 12 0.00017 0.0093 15.6 0.3 1 21 721 741 721 742 0.93
Sequence Information
- Coding Sequence
- ATGGAAAGCGAAAATAAAACAACAATTTCATCAAATGATTGTGGTAATATTTGCCGTATTTGTCTCTCAACAAATCAAAATAACCAATGTATTTTCGGTGTTAAACGATGTGATTCGATTAACAAAGATACAATTGATTTGTCTGAGAAATTTCGTTTATGCAGTGGTGTGGAGATACTGGAAAATGATGGTTTACCTACAACTATTTGCATGAAATGTATATTAAAGATCAATGATGCTCATGAATTAAGAAAGCAGTGTCAGCAATCTGATCTTCGATTAAAGAAATTATATGGTAAAGTGGAAAAGACATATAATATCAACTTTTGTAAGATTACAAAAGATCAATATTGTCAAACTGATTATTCCTTTACTTCTGATTTAATCAAAATTGAAACTGAAACTTTTTCTGCAATGGGTTATAATCCTTATTCAATGATAATTCATAATTCTGATACTAAAGATATAAAAGATCATAAAGTAATTAATGAATCTAAGTATGTAGAAGATGAAGAACCTAATAGTAACTTAAATAAACAGAATGCTCATATTAAATGTAAACAAACAGAATATGAGAAAAATGTTACAGGGAGAGAAGTTTATCGAACAAGAAGAATAACAATGTTTAAAAGAGTAACAtctatagaaaatttaaaaaaccacAAAGAAAGACAAAGGCAGTACATAAAAAAGAATACAACTGTTAAATGGGATGACAATGCAACAGATATTAAAAAAACAGATTCTCAAAATTCTTATGTTTGTCCAAAATGTTCTAGATGCTATTCTAGTAAAAGATCTTTGGATAGACATGTATTAACACATaacgaaaagaaatttatatgtGACAAATGTAATAAACACTTTTTTCAACTTGATAAATTGTTACAGCATAGCAAACTGCACATAATAAAAGACAAACCTAAACcagtattatgtaaaatatgtaatagaaattttagaaaaactGATACTATGGTAAGACATTTAAATGTTCATAAGAGAACTAACCCAAAAGAAGTTCTTTCCATTCTAAAAGAAATTAGGgacaaaagaaaattagaaaatacaattgaattaaaagaaaaaccCACTCAAGTTGAAAACAGTAAAGATAAAAAAGATATGGGAAAAGAATTTACAACTAATGAAAGTATTACCTTAAATATCCACAAAAAAAAAACATTAGAATCTAAAGACAAaaggttcaattttaatttatcatcatcatcagATGTTGCTAATGAAAATATTGATTCTTCTGACCACGAAACACTTTATCGATGTAACTATTGTACGAAGCGTTATGCGAGCGAAAAGTCACTACAAAAGCATTTACAAATGCATgttgaaaagaaatttatttgcaatgTATGTAACATGAAATTTTTCCGTCAAGATAGATTAAATAGCCATAAAAATCGATACGGGCACAATGAAGATTCAGCATCCTTAGAAGTACAAAAACCATTTGATGATAAATCagctataaaattaataaatagttggATTAGAGAGGAGCTTGATTCAGATAATGAAGAAAAGGGCTTCCCTTGTAAAATTTGTGGAAAATCATATGATACAAAAAAGTCTTTGTTAAAACATCAATTGAGTATGCATAATGCAGAAGAAGAAAACTGTGTGACATGTGGTAAAATGTGTACCTGTAATGAAAAGGAGAAAGACCAACACAAGTTAAATGAAAGATTAAAACCATATCAATGCGATGAATGTAATAAATCTTTTGAAAAGGAAGTTAAATTACAGAAACATATAAGAATTCATGAGCGTGCTAAAGAACAACAAGATGTAAATTTTAAAAGGTTTCTGTGTCACATATGTAGCAAGACCTTTAGGCAAAATACAGGTCTCATGTTCCATATGAGGACACATACAGGGTATAAGCCTCATGTTTGTAAATATTGTGGAAGAGGATTCACATCGAATTCAAACTGTATTAATCATGAAAGGACCCATACTGGTGATAGACCATTTGTTTGTCATTTCTGTAGTGCTGCTTTTGCCAAGTCATGTACACTTAAAGCACACATTACAACGCATACTGGGGAAGCAAATTATCATTGTAAAACTTGTGGTAAATCATTTAGAAGATTGAAGTACTTAAAAGAACACAAATTTACACATACAGGAGAAAAACCATATGCTTGTAAGATCTGTGGTACTGCATATAGCCATTCTGGTAGTTTATTTGTCCATGAAAAAAAGTGTAAAGCGCAATATAACAGCTATCAATCTAACTCAGCACAAAATATGCAAACCTACAGTGAATCTGAAACTTCTTCACCGAGCGTAACCCCTATCATCACAGTTTTACCACAGGTATATTTGAATAATACCAATGCAATGAATACACAAAATAGTAAAACATACATCGACAATATTCAGAAAATAAATTCTCAGAATATTGCTAATATAAATAATGTCAATACATCGGATTTACATATTCATTCGAATTCGGATATTTCTGATGTTTCTTTAGCTGTTAAAAGTTTCGCTCTTATTGGACAAATGTTCCAATCGTAA
- Protein Sequence
- MESENKTTISSNDCGNICRICLSTNQNNQCIFGVKRCDSINKDTIDLSEKFRLCSGVEILENDGLPTTICMKCILKINDAHELRKQCQQSDLRLKKLYGKVEKTYNINFCKITKDQYCQTDYSFTSDLIKIETETFSAMGYNPYSMIIHNSDTKDIKDHKVINESKYVEDEEPNSNLNKQNAHIKCKQTEYEKNVTGREVYRTRRITMFKRVTSIENLKNHKERQRQYIKKNTTVKWDDNATDIKKTDSQNSYVCPKCSRCYSSKRSLDRHVLTHNEKKFICDKCNKHFFQLDKLLQHSKLHIIKDKPKPVLCKICNRNFRKTDTMVRHLNVHKRTNPKEVLSILKEIRDKRKLENTIELKEKPTQVENSKDKKDMGKEFTTNESITLNIHKKKTLESKDKRFNFNLSSSSDVANENIDSSDHETLYRCNYCTKRYASEKSLQKHLQMHVEKKFICNVCNMKFFRQDRLNSHKNRYGHNEDSASLEVQKPFDDKSAIKLINSWIREELDSDNEEKGFPCKICGKSYDTKKSLLKHQLSMHNAEEENCVTCGKMCTCNEKEKDQHKLNERLKPYQCDECNKSFEKEVKLQKHIRIHERAKEQQDVNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHKFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNSYQSNSAQNMQTYSESETSSPSVTPIITVLPQVYLNNTNAMNTQNSKTYIDNIQKINSQNIANINNVNTSDLHIHSNSDISDVSLAVKSFALIGQMFQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01418508;
- 90% Identity
- iTF_00684937;
- 80% Identity
- -