Basic Information

Insect: Eufriesea mexicana
Gene Symbol: -
Assembly: GCA_001483705.1
Location: NW:961106-963608[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0002 0.011 15.4 2.1 3 23 247 268 246 268 0.96

2 10 0.0014 0.074 12.7 2.6 1 23 272 294 272 294 0.98

3 10 0.00093 0.05 13.3 2.4 1 23 300 323 300 323 0.97

4 10 0.00011 0.0061 16.1 0.7 1 23 330 353 330 353 0.95

5 10 9.2e-06 0.0005 19.6 0.5 1 23 387 410 387 410 0.97

6 10 0.22 12 5.8 0.2 5 21 423 439 422 440 0.90

7 10 6.4e-06 0.00035 20.1 1.4 1 23 447 469 447 469 0.96

8 10 4.9e-07 2.6e-05 23.6 2.8 1 23 473 495 473 495 0.96

9 10 5.9e-07 3.2e-05 23.3 0.9 1 23 501 523 501 523 0.99

10 10 9.9e-07 5.3e-05 22.6 0.5 1 23 529 551 529 551 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0002	0.011	15.4	2.1	3	23	247	268	246	268	0.96
2	10	0.0014	0.074	12.7	2.6	1	23	272	294	272	294	0.98
3	10	0.00093	0.05	13.3	2.4	1	23	300	323	300	323	0.97
4	10	0.00011	0.0061	16.1	0.7	1	23	330	353	330	353	0.95
5	10	9.2e-06	0.0005	19.6	0.5	1	23	387	410	387	410	0.97
6	10	0.22	12	5.8	0.2	5	21	423	439	422	440	0.90
7	10	6.4e-06	0.00035	20.1	1.4	1	23	447	469	447	469	0.96
8	10	4.9e-07	2.6e-05	23.6	2.8	1	23	473	495	473	495	0.96
9	10	5.9e-07	3.2e-05	23.3	0.9	1	23	501	523	501	523	0.99
10	10	9.9e-07	5.3e-05	22.6	0.5	1	23	529	551	529	551	0.99

Sequence Information

Coding Sequence: ATGAGGTCTACGAACGCAGAAACGTCCCTGGACCAGAGTAGAAATGATCGAGTGCCGTTCCAAGTTACTGTTGTTCCAGCTTCCAGCCCGATTGCGCATAATTCGACACCGTGGAAAATCGAAAtagacgacgatgacgacgacgacgatgacgaggaCGAGGACAGTGAAAGAACAATGGACGCCGATGAAAGCGCAATATTTTACAGTCCTCCTTCGGGGAGAAAAGTGATCGACGATCCAACAGTTGACTCGGTAAAGACAGTTTTGGTGCCTGTCAGAGACCCAGTGACGAAGGAAATTAGGAACATGTTGGTGCCTGTTGAAGTTAGGGACGAGTCTGGATTGAACATAATTAAAAGTGTGCTGATACCATTTCACGGAGAGGATGGATTAATGTCTTACGAAATCAAAAAGGTTGTAGTACCCATCAAGCCGGAATTGAGCTTCCCTCAAAAGAAAAGACCtaagaataaattattagcgAATAAAACTAAAAGCAAGCAAGTGACTTGTAAGAAAGAGGAGGAGAAACGAAACGAAGAgaaacagaaagaaagaaagaaggtgATATTAGAGAATAAGGTGAGAAAACGAGAAGGAAAGGAACGAAAGCAACCGGAAAAGAGGATAGAGAAGGAAACGGAAAAAATGCCAGAATCGGAAGGAGAAAGTGTATTAGAAACGAATGCTGCGAAAGAGGAAGTGGATCAAATATTAGACACTCTGCGAAACATTTGTCCTTTTTGTCAGAAACATTTTAAAGATGAAGATCAAATGCAAAAGCACGTTCTTAAGACACACAAGAAACCGTACAACTGCGACAAGTGCCATAAAGGCTATTTCTCTGACTTCGCCTTGGAGGAACACCAGAAAACGCACGAAGTGGTCTCGTTCTACCAGTGTTCCGTTTGTCAAATGCAGTACAAAACCATGACTGGCCTAAAGCATCATCAGATCCGCGAGCACAGTGACATAGACCCGAAATTCACCTGCGACTACTGTGGGAAACGATTCAAACTAAAGTTGGACTTGGGTCTTCATATCGACAGGTCTCACATGAACGTCTCCCACATTTGTAGATTCTGCGGCATGGCCGTGAAAAACATAGTGCATCACGAGCTGAAGCACGAGAAGAATAAGAAAGTCAGCTCTCTGTACCGTTGCAGCATCTGTCCCAGAAAGTTCAAAGCGTGGAACAGTTTGGAAAACCATTTGCTGATGAAGCACAAAGCTCCGAAGGAGGGATCTGACATGTTAAGGACGCTGTGTGAGAAGAAGTTCCAATCCAGGAGTGACTTTTATCAGCACGTGCTCAGTCAAGTAGAGGCTAAGCAACATAAGTGCGTGGTTTGCGACAAAACTTTCGCCTCTGAGTATAATCTTCGAAATCACGTGACCTTGCATTCTCAGACTTACCTGTGCTCCCAGTGTGGTAAGAATTTCACCACGAAGTATTCGTTGAAGCTGCATCTTCGCAAGCACACCGGAGAACGACCGTATCAGTGTAAAATATGCTTGAAGACATTCGCCAGATCGGCTTCTCTTAGGGTACATAGGCTAACTCATACAGGAGAAAGACCGTACGTGTGCGATTTGTGTGGTCAAAGTTTCACTCAGAGAGGTAGCATGATGGCGCATCGACGCAAGCACCCCGGAAGCCATCCGCCACCGCCACCTCTGATGCTTAGCAGACTCGAAAATAACGAGCACTAG
Protein Sequence: MRSTNAETSLDQSRNDRVPFQVTVVPASSPIAHNSTPWKIEIDDDDDDDDDEDEDSERTMDADESAIFYSPPSGRKVIDDPTVDSVKTVLVPVRDPVTKEIRNMLVPVEVRDESGLNIIKSVLIPFHGEDGLMSYEIKKVVVPIKPELSFPQKKRPKNKLLANKTKSKQVTCKKEEEKRNEEKQKERKKVILENKVRKREGKERKQPEKRIEKETEKMPESEGESVLETNAAKEEVDQILDTLRNICPFCQKHFKDEDQMQKHVLKTHKKPYNCDKCHKGYFSDFALEEHQKTHEVVSFYQCSVCQMQYKTMTGLKHHQIREHSDIDPKFTCDYCGKRFKLKLDLGLHIDRSHMNVSHICRFCGMAVKNIVHHELKHEKNKKVSSLYRCSICPRKFKAWNSLENHLLMKHKAPKEGSDMLRTLCEKKFQSRSDFYQHVLSQVEAKQHKCVVCDKTFASEYNLRNHVTLHSQTYLCSQCGKNFTTKYSLKLHLRKHTGERPYQCKICLKTFARSASLRVHRLTHTGERPYVCDLCGQSFTQRGSMMAHRRKHPGSHPPPPPLMLSRLENNEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -