Emex000329.1
Basic Information
- Insect
- Eufriesea mexicana
- Gene Symbol
- -
- Assembly
- GCA_001483705.1
- Location
- NW:13016-16038[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.11 5.8 6.8 3.9 2 21 383 402 382 403 0.94 2 15 0.028 1.5 8.6 2.6 2 22 446 466 445 468 0.89 3 15 0.0014 0.074 12.7 0.1 1 23 474 496 474 496 0.96 4 15 2.8e-06 0.00015 21.2 3.4 1 23 502 524 502 524 0.96 5 15 0.00013 0.0068 16.0 1.9 1 23 533 555 533 555 0.97 6 15 1.8e-05 0.00097 18.7 1.8 1 23 561 583 561 583 0.98 7 15 2.6e-06 0.00014 21.3 0.6 1 23 588 610 588 610 0.97 8 15 0.011 0.6 9.9 7.7 1 23 617 639 617 639 0.99 9 15 0.00057 0.031 13.9 1.1 2 23 659 680 658 680 0.95 10 15 0.00074 0.04 13.6 0.5 3 23 689 710 688 710 0.96 11 15 0.00048 0.026 14.2 0.2 1 23 716 738 716 738 0.96 12 15 0.00025 0.014 15.0 3.2 1 23 744 766 744 766 0.98 13 15 1.3e-07 7.2e-06 25.4 1.9 1 23 772 794 772 794 0.99 14 15 3.5e-06 0.00019 20.9 1.6 1 23 800 822 800 822 0.97 15 15 0.00078 0.042 13.5 0.5 2 23 828 849 827 849 0.94
Sequence Information
- Coding Sequence
- ATGAGCATAATTTGTGCTgtcaaaaattgtaaatattcttcgGATAATGAAGGCTCAATAAATGtcaaattcataaattttccaaacagtGATACTTCAAAAATATGGGCACATCAGTGTGATAGGACAGATCTGTTAATGAAATCAAATGAAGAGctacatttaaattattatatatgttcTCATCATATAGAAGATCGTTATTATATAAGCAAAATAGATCCTGTGATAATAGACCAACATGCTATTCCAACATTATTTGAACTTCGTGCTACTGAAAAAGATGCAAGAAATATCTTTGACAGAAATGAACAAACAGAAATAACTGATAATGTTGTACTATCATACTGCGATATGGATGTTCAAATAGACCAATATAACGatattagtattaaattttcaaatttatgtagaatatgCGAGGAATCATGTCTGGATGGcatagaaatattttcattgaaaGGAATGGacctaaaattaaaagaaaaaataagttTACACCTACCAATCTCATTGGATATGGATGATTTAATGCCACAGAAATTGTGCATGAAGTGTTATAATAAGTTAGAAGTTGCACATTCGCTAGTTATAACTTCTTTGAAAACAGATATGAGATTAAAAAAGTTTTTAAACATTAATGCAGAAcTAAATTACGAGGAGAGGTATAATGAAATAGCAAAAAAGTGTTCCTTAGAAATAGCTCAAGAAATATGTATTAATGAAGCAACTGAAGTTACATCTACAGAATTATCTTCTAGTAAAATTGATGGAGTTTCTACAACTGAAGAAGACACTGGAAAGTTTAGTCacttagaaaatattaatgcgcAAAAAGACAactttgtaaataatataagGAAAGTGCAATCTGTGTTAAATGTTAAACCGcacaatgaaaaaaataaaactaatgaatgtacaattaaaataataaaaaattacccAAATAATGAAACATTGAACAGTGAAATTCAGTGCATtcattgtaaaaatatatttaagtcacaggaaatatttgaaaatcacAAAATGTTGTGTGATGAAGGAGAAACAGTAAtacaaaaggaaaaagaaactaataataatttaaatgataAAGAATCCAATAGTGAAAAAGTAATGAACTTTCAATTGATAGCAAAAACATGTAATATTTGTCATGAACACTTTGAAAGTGAAAAACACTTTGATGAGCATAAACGTTCATATTGTAAGTTCCTCCAAGAAGAACATTATCAGGTTCCTAGTAAAATAAGTACAAGCAAAAAACAAACCAATAGCTTCACTGACTTTTGCAATATAAACAATATTCTACCAATGGATAATAATAAGAAATGTGGTCATTgtgatttaatttataatactaaaaaagaattattaagtCATGTTGTGGAATGTCACAATAGTcaacttttatttaaatgtatcaTATGTGATAGAGCCTTTGAAAAATGGTCTAGCTTAGACATACATGAGGCTACTCATAGAATAGACAAACCTTATTTATGTGATTTATGTGGAAAAAGTTTTAAACATTCTAACAATTTAAGAGGTCATAAAAGGACTCATTTAGATGATTCAAAAAAGAAACGACACGTTTGTGATATTTGTGGAAATGCGTTCCGATCTAGATTTCATTTGGGGGAACATATGAATCAACACAATGGAAATAAACCTTATTCTTGTGAAAAGTGTGGGAAAGCTTTTTACAAGAGAATACAATTAAGACAGCATAAATTGTCTCATGGCTTGAATAAACATATTTGTCCAATATGTGGAGCAGCTTTCAATCGTAAGGGAAATATGAATACACATCTTAAACGTCATAACAATGGAGATAATTCATACACGTGTAGTGTATGCACGCACAGGTGTAAGTCAATGAGTGAGCTAAAATCACATAGGAAAAAACACACAGAACAAGACATTATAGACAATATAAAAAAGAAGCGTATCGATAAAACTATATGGCAATGTAAAACCTGTAATCGAGTATTTTCGACGCGAGCAGTATTACTAAACCACGAACATATACATAAAGAAGAAAGAATAAGTGTTGATTGCAACATTTGTGGGAAAAAATTAGCTAGCAAAAATTCTTTGATATATCATAAAAAATCTATTCATTCTACAAACAAGCCATACATGTGTCAATACTGTGGAGAATCGTTTGTTACCAAAGATGTACGTGTTATACACGAAAGAATACACACAGGAGAACGTCCTTATGtttgtaaaatatgtaaaatggaATACAAATGTTCAAGCAATCTTAATCAGCATATGAAAATTCATTCGGGAATCAAACCTTACAAATGCTCGTATTGTAATAAGAGTTTCACACGAAGAGGAACGCTAAACGTGCATGAGAGGATTCACACTGGAGAGAAACCGTTTGCGTGTGATACGTGTGGTAGAAGTTTTTCACAAAAGAATGACATGCTTAAGCACACTAAAACGCATAATACCAAATCATTGTGCTGTGAACAATGCGACGAAGTTTTCGCAAACAAGAAAGATATCCTAAAGCACATTGCTTTGCACGAggaaaataatactataattcaGGGGTATGTAGAAGTACAGCAAGAAATAGCACCATATGTGACTATACCATGCTctgaatttgaataa
- Protein Sequence
- MSIICAVKNCKYSSDNEGSINVKFINFPNSDTSKIWAHQCDRTDLLMKSNEELHLNYYICSHHIEDRYYISKIDPVIIDQHAIPTLFELRATEKDARNIFDRNEQTEITDNVVLSYCDMDVQIDQYNDISIKFSNLCRICEESCLDGIEIFSLKGMDLKLKEKISLHLPISLDMDDLMPQKLCMKCYNKLEVAHSLVITSLKTDMRLKKFLNINAELNYEERYNEIAKKCSLEIAQEICINEATEVTSTELSSSKIDGVSTTEEDTGKFSHLENINAQKDNFVNNIRKVQSVLNVKPHNEKNKTNECTIKIIKNYPNNETLNSEIQCIHCKNIFKSQEIFENHKMLCDEGETVIQKEKETNNNLNDKESNSEKVMNFQLIAKTCNICHEHFESEKHFDEHKRSYCKFLQEEHYQVPSKISTSKKQTNSFTDFCNINNILPMDNNKKCGHCDLIYNTKKELLSHVVECHNSQLLFKCIICDRAFEKWSSLDIHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSKKKRHVCDICGNAFRSRFHLGEHMNQHNGNKPYSCEKCGKAFYKRIQLRQHKLSHGLNKHICPICGAAFNRKGNMNTHLKRHNNGDNSYTCSVCTHRCKSMSELKSHRKKHTEQDIIDNIKKKRIDKTIWQCKTCNRVFSTRAVLLNHEHIHKEERISVDCNICGKKLASKNSLIYHKKSIHSTNKPYMCQYCGESFVTKDVRVIHERIHTGERPYVCKICKMEYKCSSNLNQHMKIHSGIKPYKCSYCNKSFTRRGTLNVHERIHTGEKPFACDTCGRSFSQKNDMLKHTKTHNTKSLCCEQCDEVFANKKDILKHIALHEENNTIIQGYVEVQQEIAPYVTIPCSEFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00684209; iTF_00684915; iTF_00684826;
- 90% Identity
- iTF_00684209; iTF_00684915; iTF_00684826;
- 80% Identity
- iTF_00684209;