Basic Information

Insect: Eufriesea mexicana
Gene Symbol: SCAND3_1
Assembly: GCA_001483705.1
Location: NW:6675-9120[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 6.5e-06 0.00035 20.0 3.3 2 23 282 303 281 303 0.97

2 15 0.00012 0.0066 16.0 3.2 1 23 309 332 309 332 0.97

3 15 3.5e-06 0.00019 20.9 1.4 2 23 412 433 411 433 0.97

4 15 4.4e-06 0.00024 20.6 1.8 1 23 439 461 439 461 0.97

5 15 0.00061 0.033 13.8 0.3 1 23 467 489 467 489 0.97

6 15 2e-07 1.1e-05 24.8 0.9 1 23 504 526 504 526 0.98

7 15 2.8e-05 0.0015 18.1 0.5 1 23 532 554 532 554 0.94

8 15 7.1e-06 0.00038 19.9 2.2 1 23 560 582 560 582 0.98

9 15 0.00059 0.032 13.9 0.2 1 23 588 610 588 610 0.99

10 15 7.7e-06 0.00042 19.8 0.3 1 23 616 639 616 639 0.93

11 15 1.3e-05 0.00071 19.1 1.3 1 23 645 667 645 667 0.98

12 15 0.00029 0.016 14.9 4.7 1 23 673 695 673 695 0.98

13 15 4.3e-06 0.00023 20.6 0.2 1 23 701 724 701 724 0.96

14 15 2.9e-06 0.00016 21.2 0.6 1 23 730 752 730 752 0.96

15 15 2.6e-06 0.00014 21.3 4.5 1 23 758 780 758 780 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	6.5e-06	0.00035	20.0	3.3	2	23	282	303	281	303	0.97
2	15	0.00012	0.0066	16.0	3.2	1	23	309	332	309	332	0.97
3	15	3.5e-06	0.00019	20.9	1.4	2	23	412	433	411	433	0.97
4	15	4.4e-06	0.00024	20.6	1.8	1	23	439	461	439	461	0.97
5	15	0.00061	0.033	13.8	0.3	1	23	467	489	467	489	0.97
6	15	2e-07	1.1e-05	24.8	0.9	1	23	504	526	504	526	0.98
7	15	2.8e-05	0.0015	18.1	0.5	1	23	532	554	532	554	0.94
8	15	7.1e-06	0.00038	19.9	2.2	1	23	560	582	560	582	0.98
9	15	0.00059	0.032	13.9	0.2	1	23	588	610	588	610	0.99
10	15	7.7e-06	0.00042	19.8	0.3	1	23	616	639	616	639	0.93
11	15	1.3e-05	0.00071	19.1	1.3	1	23	645	667	645	667	0.98
12	15	0.00029	0.016	14.9	4.7	1	23	673	695	673	695	0.98
13	15	4.3e-06	0.00023	20.6	0.2	1	23	701	724	701	724	0.96
14	15	2.9e-06	0.00016	21.2	0.6	1	23	730	752	730	752	0.96
15	15	2.6e-06	0.00014	21.3	4.5	1	23	758	780	758	780	0.99

Sequence Information

Coding Sequence: atgAATTCACTTTGTAATACCACAGACAAAAAATTATATCATAGAGGACAAATTGATGTAATAGATATGCCAGTACAGTTAAATTGTAATTACAAGTATTTTTTTGTTTATGAAGATCAAATATCCAGGTTTGTTGTGTTGAAAGGTTTACATGAAAACACAGCAAATGAGGTAGCTGTAAAACTGTTAGACATATTGACTATTATTGGAGCACCACAGGTTTTACAAAGCAGTAATGGGCGCAAATTTGCAGAAGAAGTTGTGCAAGAGTTACGTCTTTTATGGAAAGATTTCATAATACTTCATGGAGAAATTActgaaattaataaacaaaatagaGATTTCAAAAACTTACTTGAATGTTGGATAGCGGAAAACCCAACAAAAACATGGTATGAAGCTTTGAAACATATacagatatttcaaaattctacATTTCGTtgtgaaaatggaaaaattcctTATGACATATTATTTGGGAAAAATGTACATGAAGAGTTTCAGAAACAAACTaatagaataaatttaaaaaataatatatggaCTGAAGAAGAATGGATTGATCTCTTATCTGACAAACAAGATAGTGTTAAAAAAGAAGGTAGACAACAGCTTATAGAAGTCCCAACTTTTGCAAGCATTAGAGATGTAGATTGTTCAAAAGATTGTGAAAGTGAAGACTCTTGCACTGAGACTAGAGACGATCTTCGTAGGGATACTCCTGGCTTTAATTTTGTAAATGTTAAAAGTGAACCTTTAAATATGCATATGGAAGATTCAGTATTTGAGGATGAATCAGGTATAGATGATAAAATATCAAACTtggaaaatcaaattaatttaaaatgtaaaatctGTCAGAAACAATACATGAAACCAGGACATTTAAAAAATCATATGAGAACGCAtataaaagggaaaaaatttGAATGTAAATTATGTAACAAAATGTTTCACGTTTTGAGCTTATATGAAAAACATATGCGGCAATCTCATAGACAAAATAAATTATCCAGTTTCATCAGAAGTAGGAGAAGTAAAGATTCACAAAATGATACAATGTCAGATGTGAAATCATCTAACTTAAGAAGTTTCTCAGattcaaatgtcaataaaacgcAATCCAATGAAACAAATGACTGTCAAAAGGCAACAAAAAGTTTACATCTTcttaaggaaaagaaaaagatagcAGACAATCGTTCAATGAAAATAAATGGAGATCCAACTCTGGAATGTTCATATTGTAATCAAAAGTTTAATTTTCCTAGTGTATTAAAAAGGCATATGCGATCTCATACGAATGAAAGACCCTATATTTGTGAAATTTGTAATAAGAGCTTTAAACAATTAGGTCATCTTAGTCAACATTCATTAACACACAAGGATTACCGTTCTTTCCATTGTGCAGTTTGTGGTGTGAAATTTGAATCTTTGGGTTCGCTAAAAATTCATGCTCAGTCACATAAGGAGGATTATATTTCGAAAACTAAAGAGGCTTTTCGTTTATTTGAATGTGATAATTGTAAAAAAGTGTTTACTACTAAAAGCGTTTTGGAACGGCATATACTCACTCATTCTCATGAACGTCAATTCCCATGTATAATTTGTGGAAAAAGATTCAAACAGGCAGGACACGTAAAGTCTCATATGCTAGTGCATACAGGTGAACGAAAATTTGAATGTTCGGTTTGCAAAAAAAGATTCAGTCTTTCAAATTCTCTAAAGAAACACATGTACGTGCACAATGGAGAAAAGCCATATCAATGTGACGTATGCGGTGCAAGATTTcttgaaaaaagaaatttaaacgGACACTTAATGACCCATACAAACGAGCGTCCATTCCGCTGCAAGATTTGCGGAAAACGCTACACTTTGGCGGATACTTTGCGTCGACATGTAAGTGCTGCGCACGAAGATGGACGCACATATCAATGTGAGATTTGTGCGAAAATGTTCAAACAGCTTGCCCATTTATCCGTTCACAAGAAAGTACATAACGACGAACGACCATTCCAGTGTCATTTATGCGAAAAGAATTTTAAGCATAAAAATGTGCTTAAATCTCACTTAGCTATACATGCAAATGTGAGACCATTTGAATGTGATGTATGCAAAGCTACATTTGTTAGAAAGACAAATTTACAAACACATATTGCATCAGCTCATATGAATGAAAGACCATATGTTTGTACTATTTGTGGAAAACGATTTAAACAAATTAGTCACTTAAATGGTCATGTAGTAGTACATAGCAATTTAATGCCTTATCAGTGTGATTTCTGTGATCGTCGATGTAACAGACTCGATAATTTGAAGAAACACATGCGTCTTCATacgaaaaataaagaataa
Protein Sequence: MNSLCNTTDKKLYHRGQIDVIDMPVQLNCNYKYFFVYEDQISRFVVLKGLHENTANEVAVKLLDILTIIGAPQVLQSSNGRKFAEEVVQELRLLWKDFIILHGEITEINKQNRDFKNLLECWIAENPTKTWYEALKHIQIFQNSTFRCENGKIPYDILFGKNVHEEFQKQTNRINLKNNIWTEEEWIDLLSDKQDSVKKEGRQQLIEVPTFASIRDVDCSKDCESEDSCTETRDDLRRDTPGFNFVNVKSEPLNMHMEDSVFEDESGIDDKISNLENQINLKCKICQKQYMKPGHLKNHMRTHIKGKKFECKLCNKMFHVLSLYEKHMRQSHRQNKLSSFIRSRRSKDSQNDTMSDVKSSNLRSFSDSNVNKTQSNETNDCQKATKSLHLLKEKKKIADNRSMKINGDPTLECSYCNQKFNFPSVLKRHMRSHTNERPYICEICNKSFKQLGHLSQHSLTHKDYRSFHCAVCGVKFESLGSLKIHAQSHKEDYISKTKEAFRLFECDNCKKVFTTKSVLERHILTHSHERQFPCIICGKRFKQAGHVKSHMLVHTGERKFECSVCKKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICGKRFKQISHLNGHVVVHSNLMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00684907;
90% Identity: iTF_00225376;
80% Identity: -