Etru024686.2
Basic Information
- Insect
- Eudonia truncicolella
- Gene Symbol
- -
- Assembly
- GCA_949315975.1
- Location
- OX438852.1:3582108-3601811[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.5 1.3e+02 4.0 5.6 1 19 324 342 324 344 0.95 2 11 0.024 2.1 9.6 1.1 1 23 366 389 366 389 0.95 3 11 0.12 10 7.5 3.3 1 23 827 849 827 849 0.98 4 11 0.0036 0.31 12.2 0.1 2 23 855 876 855 876 0.98 5 11 0.0066 0.58 11.4 0.7 5 23 978 996 975 996 0.92 6 11 3 2.6e+02 3.0 5.0 2 23 1012 1033 1011 1033 0.96 7 11 5.6e-06 0.00049 21.0 2.5 1 23 1039 1061 1039 1061 0.99 8 11 0.00022 0.019 16.1 2.8 2 23 1069 1090 1068 1090 0.98 9 11 0.029 2.5 9.4 0.9 3 21 1098 1116 1096 1117 0.91 10 11 0.17 15 7.0 0.4 1 19 1127 1145 1127 1146 0.89 11 11 0.00058 0.05 14.7 0.6 3 23 1159 1180 1158 1180 0.98
Sequence Information
- Coding Sequence
- ATGTCTGAGAGACGTAGAAAAACTAAATTAGTGCCGCGGAGTGAGACTAATAAATATGAGAAGGGTGAAAAGGAGAAGTTTGCCAAAATGAAGAGTCTGCATAAAAAAACGAACTTGTCGGAGATAGACAAAGCTGTAAGTAGTCAAGATGATAAGCTAAAGATAGCTGGGCCGATCACATTTCGTGTCAACATTGAAGTTGAAGCGTTCGATGACAGCAACGTTCAGAAAAAGATCAAAGTAGAACCAATCGATTGTAATAATGATATTGACATCACTGACAAATCTGATGCGGAAAGCACAATACAACAAGACCCGACCGTTAATGACATTGAGGAAacagaaattaatattaatgatcCAGGTAGCAATGAAGGGAATAACAAACCAGACACTCTAATAGTTAAAAGACAAGATAAAGACATATTGTATACACGTCATAATATATATGGCTCTGTAATTTTTCAAGAACCTCAAATCGAAACGATTATGCAATGCGAGATAATCGAGGAATCTGTGTACGATGAATTAGAGAAGCTATCGAAAATGACTTTGAGTGTAGCCGATCAGATACTATTGGTTGAAGCGAGAAACTCTTGGGGCAGAATCACGTATAAGCAACACACTGAAACGAAGCAGGAATGCCAAATTCAATTGGCCATAAACAACTGGAAAAATTGGGTCACCCTTTCCAAGATTAGAGATACACCTCTAATGTATAAGTGCTATATTTGCACGAAAGCGTGGTGGCGCTTAGGCCCTTTCAGGGAGCACGCCAAAATGCATGAACATGATAACTTTTGCTGTTACATCGAAAGTCAATTGCACGAATGCAACATGATAGCTTGTATCGGTGAGAAAGCACCCTACAGAGAGATTCCGATCGAGTCTGAATGTTGTTGGAAATGTGGTTACGACTATGCGTTTCACAAGGATTCCTTGGAGCTCACGAAAAGCACAGGATACTCATAcatatgtaaatattgtaacGACAAGTTCTACACGTGTGACGCTCTTAACAACCACTTCTGTTTCTGCTTGCCATACAAAAAGAGTCTGGTACAAAACAAGACTGACTACAAGCAGCTCAAGTTCTACAGCTGTCGCATATGCAACTTGACACTTACGTACAAGGATGATATACAAAAGCACTATATCAATTTCCATTCTGTACCATCAGACTTACCTTTGTTACTACCAGTTAAAGTGTGTATGTACTGCAATGAGTATCATGTACATAGCAGCTTTCACTCGTGCTCGAAGAAAAAGCCTAAGCAATGGTGTATGAGCTGTAACAAACGGTTCCCTTCGGTGCTCACAAAGAATTTGCATATGTGTGCAAATAAAGGGTCCATCGAATGCCGGATATGTGGGGAAGACTTGAATACCAAGTGTGTAGAAGTGAATCATATTGTAACGCATAGCAAAAAGTTTTTGCTAGTATACAAGTGTGAACAGTGCGAGGACAATATGTTCCTTATGAACTCGTATTCGAGGAGGCATCATAGCAGGCTTTGGCAGAACAAACATTTTGGTGAAGCGatTAACAAGAAGAATGGTACCAAAAGTAAAGGACACGGTGTATTTGCCGAAGAAAGTCATAAGGGCCAAATTGAAATTCATTCAGATGATAGTCAAACGGagattttaaatgaaaacgaTAATATCGATATTAATAATGTCAAAAAAGAGAAGATTTCAAATGAGGACGCTATCAACACCGCTGAATCTACTGATAAACATGGTGTCGCAGCGATAGAGAGTGTCAATAAAAGTGTATGTGAAAGTGTCAGAATAAAAgtcgaaaaaaatattgacgatCCGCAATTGTTCGATGAACACAATTACGCGATCGATGAGAAACAAGAAATCGATTTTGAATGCACCAAAACTAATGTAAATCGTCCAATCAAAGAGGAACCAGCGAGATACGAAGATCTTCTGTTCAAAGTATTTGGCAGTCCACTAAATTTTGGGACAACCACGGCCACAATTATCAAGGAAGAGCCAATAGATGAAGAAATATTCGAAGACGACATCATAGTACTGACAGATAACAACAATTCTGACACTAGTGTTGTCAAAACTGAAAATGTAGACACTGGGTACAATCAAGAAGATTTAAACTTAGAAACTGTGGATAATCAAATAGATTTACCTGCAGAAACTGTGGACAATCAAATAGAGATACAACCCGATTGCATTGAAGGGTACGATCAAGACGACACTGCTGGTCAATCCATTGAATATAGCTACAATGGTACAACTTTGAACTTGGACGATTCAGAGCCAGGTAGATTGATTGTCGACCTGAATCGGGAAGAGTCGTCCTCTGACTCGGACGCGGAGCAAACTGAATGGTTGCCACAGCCATCGACTTCAAAAACGAAGACTAGAACGACACAGAAGTACAACTGCAGTTGTATGTCCGATAACCGCAAAATGTACATGCAGCATCTATCTAACTGTCTATCACAATATAAATGCACTAAATGTGAACAGACTTATCATTCTTTCGGTGCATATGTGTGGCACTTTCAAACTCATGGGAACGCAGTTAATACTTGTCCACAATGTGTTATATCTTACCCGTCTACAGCTTTACTGATATCTCATATGAAGATGCATATTAAATGCGCTTATAAGAAGGAAAGTGTATTGAACAGTAACATAAACAAGAGTAAAATGAATGTGGAAAACAAGTTTGTGTGTGTATTGTGTACGATGTCTGTGgattttgaatttctttttgTTCATTGGGAAAGCCACTTGGATACCAATCTTACCACAAACGAAATTCAGGTTAAAGAAGAGGATGTTGAAGACCGAGAAGTTATGGCCGGCTCTCTGGATACAGACGTTGTCAGAAATATTAagaAGATTCTGCTGTTTAAGAAAGGCAACTTAAACCACAAGGAGAGAATATGCATAGTGTGCAACCGAGAGTTTAATAGAAAAAACGATTTCAAACGGCACCTGATTGAACACTTGCTTACAGACGCATTGAGTCGCCATTCGTTATATAGCGCGTTGAAATGCCAATTCTGTGAACACAACCTCTTCAAATCGGACCGGTTCCGAAAGCATATGCGAGACCATGCATGCCTTCCGGTGTATAGGTGTGAATTATGTCTAAAGTCGTTCAGTGACTCAAGTAACTTTGCGAAGCATAAGAAGACGCATGACATTGGTACTAAACTGATGCAATGTGATGTTTGTAAGAAGAAGTTTCACAGCAAAGTTATGCTAGTTAAGCATATTAAGATGCATCAGAACACGAAACCGGTCGTCTGCGAATGCTGCAACAAGACTTACTACGACGCATCGGCCTACCGCCGCCACCGGCGAAACGTCGAGTTCAGCAAGACAGGTAGACGGTTCCCCTGCCAAATATGCAAGCTTAAGTTCTCCACTCTAAAAGATAAATGGGATCACTTGTGGGAGGCTCACAAGCAGCGAAAACATATAGCGGACTGCCCGATATGCTACAAGTCTTTCAGGAAGTTCCTTGACGTGAAAGCACATATAAGGACGTTTCATAAAAAAGACGTGTCGTTGCTAAGAGCTAGTATATATAGGAGTCTGtttgggtcacctgatgggccGAAAGCGAAGAATACGCAGAACAAAGAAGCCGATGAGATTATGATAGTCTTTGACAGTACGTAA
- Protein Sequence
- MSERRRKTKLVPRSETNKYEKGEKEKFAKMKSLHKKTNLSEIDKAVSSQDDKLKIAGPITFRVNIEVEAFDDSNVQKKIKVEPIDCNNDIDITDKSDAESTIQQDPTVNDIEETEININDPGSNEGNNKPDTLIVKRQDKDILYTRHNIYGSVIFQEPQIETIMQCEIIEESVYDELEKLSKMTLSVADQILLVEARNSWGRITYKQHTETKQECQIQLAINNWKNWVTLSKIRDTPLMYKCYICTKAWWRLGPFREHAKMHEHDNFCCYIESQLHECNMIACIGEKAPYREIPIESECCWKCGYDYAFHKDSLELTKSTGYSYICKYCNDKFYTCDALNNHFCFCLPYKKSLVQNKTDYKQLKFYSCRICNLTLTYKDDIQKHYINFHSVPSDLPLLLPVKVCMYCNEYHVHSSFHSCSKKKPKQWCMSCNKRFPSVLTKNLHMCANKGSIECRICGEDLNTKCVEVNHIVTHSKKFLLVYKCEQCEDNMFLMNSYSRRHHSRLWQNKHFGEAINKKNGTKSKGHGVFAEESHKGQIEIHSDDSQTEILNENDNIDINNVKKEKISNEDAINTAESTDKHGVAAIESVNKSVCESVRIKVEKNIDDPQLFDEHNYAIDEKQEIDFECTKTNVNRPIKEEPARYEDLLFKVFGSPLNFGTTTATIIKEEPIDEEIFEDDIIVLTDNNNSDTSVVKTENVDTGYNQEDLNLETVDNQIDLPAETVDNQIEIQPDCIEGYDQDDTAGQSIEYSYNGTTLNLDDSEPGRLIVDLNREESSSDSDAEQTEWLPQPSTSKTKTRTTQKYNCSCMSDNRKMYMQHLSNCLSQYKCTKCEQTYHSFGAYVWHFQTHGNAVNTCPQCVISYPSTALLISHMKMHIKCAYKKESVLNSNINKSKMNVENKFVCVLCTMSVDFEFLFVHWESHLDTNLTTNEIQVKEEDVEDREVMAGSLDTDVVRNIKKILLFKKGNLNHKERICIVCNREFNRKNDFKRHLIEHLLTDALSRHSLYSALKCQFCEHNLFKSDRFRKHMRDHACLPVYRCELCLKSFSDSSNFAKHKKTHDIGTKLMQCDVCKKKFHSKVMLVKHIKMHQNTKPVVCECCNKTYYDASAYRRHRRNVEFSKTGRRFPCQICKLKFSTLKDKWDHLWEAHKQRKHIADCPICYKSFRKFLDVKAHIRTFHKKDVSLLRASIYRSLFGSPDGPKAKNTQNKEADEIMIVFDST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -