Etru023043.1
Basic Information
- Insect
- Eudonia truncicolella
- Gene Symbol
- -
- Assembly
- GCA_949315975.1
- Location
- OX438849.1:1547897-1562066[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.6 3.1e+02 2.8 0.4 2 23 131 152 130 152 0.90 2 13 0.016 1.4 10.2 1.0 1 23 159 181 159 181 0.95 3 13 5.9 5.2e+02 2.1 0.0 1 23 185 208 185 208 0.91 4 13 9.7e-05 0.0084 17.1 0.3 2 21 213 232 212 233 0.94 5 13 0.00028 0.025 15.7 2.1 1 23 241 263 241 263 0.96 6 13 9e-05 0.0079 17.2 4.3 2 23 271 292 270 292 0.97 7 13 0.0046 0.4 11.9 0.7 2 23 297 318 296 318 0.97 8 13 0.00024 0.021 15.9 4.1 2 23 330 352 330 352 0.96 9 13 0.0022 0.19 12.9 0.2 1 23 360 383 360 383 0.94 10 13 0.011 0.92 10.7 0.2 6 23 394 412 392 412 0.90 11 13 2.3 2e+02 3.4 0.2 3 11 423 431 421 435 0.82 12 13 0.03 2.6 9.3 0.4 8 23 454 469 453 469 0.95 13 13 3.3e-05 0.0029 18.6 1.3 1 23 474 497 474 497 0.96
Sequence Information
- Coding Sequence
- ATGGAGGTTGAGGAATCCGAATCGCCGGTTTGTTTAGTGATACAAGAAACAATTTACGTAAAGCCTGAAATCTTTGACAGTGGAAGTGATGAGAACATTactatttgtgaaaatatttacataaagtcAGAGAACGACACAGAGAAATCGAATACGCAGGAAGATAAAGATTCTTTGAAGGAAGTCCCACTAAAGGAAACCGAATCGTCTACCAGGAATGGGAAAAGCCATCCAAAAATTAAAAGTATAGAATCTAGTGCAGCTAAAAGTCCCGACGACGTACTATCTGCCAACGACATAATAATGTACATAGAGATGATAAAGCTCACGGAGGAAGAGCGTCAGGCCGAACACCAAGTGGTTATGGAGCAGTTGATGGGCAGCCATAGCGTGTGTGATGGGTGCGCGCTCGGGTTCACATGCGACAAGGATTTTGAGGCACATTTGAAGCTACATTCCGACGATCACGGCCAGTTCCAATGCGACATATGCCGCGTACATTTTGAATCGGTCAGCTCTGTGGAGAAGCACCGTGTGCAGCATTACGCTAGCTACCGCTGTATGCTGTGCCGAGCTGTGCTGAAGGACTATGAGCTGGCAGCGAACCACGTGGCTAGAGAACACGTCGGCCGGGTGCGGTGCCCCATCTGTGACAGGGGGTTTAAACGCGCGATCTGCCTCAGCAAGCACATGGAACAGTGCCGCACCGCGCCCAAGCAGCACGCGTGCCCCGTGTGTGACAAGCTCTGCAACGGGAAGCCGCAACTCAGCAAACACATGAGGAGCCACTCGCCCCATTCGCCGATCTTGAGCTGCAACACATGCCACCTCCAGTTCAAGAGCCGTTACTCGCTGCGGCGGCATTTGCTCACTCACGAGGCGAGCGTCCGCTGCTCCGCCTGCGACCAGCTCTGCAAGAACCCGCAGACCTTGGAGGTTCATATGTTGACGCATAGCAGAAGGCAGAATAAGAAGCCGGCGGAGGCGCGCTGCCCGCACTGCGAGCGCGTCTGCTCCAACCGGCAAATGCTGAAGCGACACATCGCACGGATGCACGCGCTGGACAGGGAGaaaaaATTCGAGTGCGACTACTGCGGCAACCGGTTCATGACCAAAGGCGAGGCGCGCGAGCACATCTCGTGGACGCACATGGGCGCCCGCCGCGCGCACGCGTGCCGCTGCGGGCGCGTGTTCCGCACGCCGGCGCGCCTGCGCGcgcaccgcgccgccgcccacGCGCGCCGCCCCGCGCCCAGGGACCATCTATGCGATGTGTGCCAGAAGGCGTTCCCGGTGAGCAAAACTACCCATGTGCCATCTTTGACAGCTAGTGCAGCTGTTAAAGATCATCTCTACCAGAAGGCGTTCCCGTCCAACTCGGAAATGAACCGGCACAAACGCACGCACGCCGGCACTCGCTACCCGTGCCCCGAATGCGGGGAGACGTTCAAAACACGCAACTACGTCAACATCCACCACAAGCTCAAACACATGAACATGACGCGAGATGACATCAGGCAGCAGAACAAGCAGAAACGAGAACAGCGTATGCAAGACATCGCTAATGCGCACAAGAAGATTAGAATAGCCTACAATCAGGAACGCGATGCTAAGAATGTTCGCGACAAGATTGGGTGCTTTCGCGAACCGAAGGGCTGTGTGGCTGATGTTAGTGGCAATGGCAAATGTGAAGATAACAAGATCAGTGTACCCAAGTTTGATACTTTTGTGGATGTGCTGAAAGATAGtgattaa
- Protein Sequence
- MEVEESESPVCLVIQETIYVKPEIFDSGSDENITICENIYIKSENDTEKSNTQEDKDSLKEVPLKETESSTRNGKSHPKIKSIESSAAKSPDDVLSANDIIMYIEMIKLTEEERQAEHQVVMEQLMGSHSVCDGCALGFTCDKDFEAHLKLHSDDHGQFQCDICRVHFESVSSVEKHRVQHYASYRCMLCRAVLKDYELAANHVAREHVGRVRCPICDRGFKRAICLSKHMEQCRTAPKQHACPVCDKLCNGKPQLSKHMRSHSPHSPILSCNTCHLQFKSRYSLRRHLLTHEASVRCSACDQLCKNPQTLEVHMLTHSRRQNKKPAEARCPHCERVCSNRQMLKRHIARMHALDREKKFECDYCGNRFMTKGEAREHISWTHMGARRAHACRCGRVFRTPARLRAHRAAAHARRPAPRDHLCDVCQKAFPVSKTTHVPSLTASAAVKDHLYQKAFPSNSEMNRHKRTHAGTRYPCPECGETFKTRNYVNIHHKLKHMNMTRDDIRQQNKQKREQRMQDIANAHKKIRIAYNQERDAKNVRDKIGCFREPKGCVADVSGNGKCEDNKISVPKFDTFVDVLKDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -