Etru002459.1
Basic Information
- Insect
- Eudonia truncicolella
- Gene Symbol
- -
- Assembly
- GCA_949315975.1
- Location
- OX438826.1:16373991-16387269[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00048 0.042 15.0 0.3 2 23 230 252 229 252 0.94 2 12 1.8 1.6e+02 3.7 0.2 5 23 261 279 259 279 0.92 3 12 0.0052 0.45 11.7 1.2 1 23 312 335 312 335 0.95 4 12 0.079 6.9 8.0 0.3 5 23 344 362 342 362 0.95 5 12 0.0093 0.81 10.9 2.0 2 23 369 390 368 390 0.96 6 12 1.2e-05 0.0011 20.0 0.8 1 23 398 420 398 420 0.97 7 12 0.00025 0.022 15.9 1.2 1 23 429 452 429 452 0.97 8 12 0.00024 0.021 15.9 0.2 1 23 458 480 458 480 0.97 9 12 1.3e-06 0.00011 23.1 4.2 1 23 486 508 486 508 0.98 10 12 0.00013 0.011 16.8 1.1 1 23 513 535 513 535 0.98 11 12 0.00025 0.022 15.9 6.4 1 23 541 563 541 563 0.97 12 12 0.00025 0.022 15.9 2.1 2 23 570 592 569 592 0.95
Sequence Information
- Coding Sequence
- ATGGCTGTGAATTTAAAAGATTACTGTAGACTTTGTGCGAAGAAGGAAGACTTTACAAAAGAGCTATTTGATGCAAACAATAGAAgtgctttaaaattaataaaggaTCTTATTCAAATAGCTATTAATGAGAATGATGAATTACCaacaaaaatctgtttaaattGTGAAGAAAAGATGGtctcatttcaattatttattctcGAGTGCTTTAAAGCGCAAGaaagtttaaagaaaatttatttgcaaaacAGTGATTTGGGTATTAAACTAGAATCAGAAATTTACTTTGGTGGCCCTGATGGTATTAAGTCAGAGGTGAAAGATGAAATGTCTGCTGAAGATATAgtattatgTGCAatcaataatgatgataatgaatttaTAAAAGATGATGAATTCAATGATTATTCAAACGACAATGGTGAAAGTGATTataatgatgttgatgatgacgatgatgatgatgatgatgatgaagaagatgatgatgaggagGAAGAGGATGATGACTATACAGACAATGTGACGCTGGCcgcattaaaacaaaataaagctaTTATTGGAAAACCTATTAAAACCGAAAAAAGAAGATATAGAAAAAGGTATAACAATTATGGAGATCCTAAGGAGGTAGAAAAAGTTCTCCAAAAGTCAGACTTGAAAGTTAGGGACTTTGTCAAattgcAATGTGAAATTTGTGAACAAAAACTGAAGTCATGGAGTGACTTGCGAGTTCATTATTTTAAAGCACACAAAAGTAAACCATTGGTTAACTGCATATGTGGTTTTGTCATTAGATCTAAGAGTGTCCTATACAAGCATGTGTCTGATCACAAGATAAGAAATCAGAAATCCAACGATAATGAAAATGCCACTAAGGGCGAAGTGGACTCCAAATATTCCAGccttaaaataaaagattttgtcaCatttgcATGCACTGTTTGCCAAAAGAAGCATTCCAGTTGGTACAGTTTGAAAGCACACACTGAATCTGCTCACAAAATAGCACCTGTAGTCAAATGTATATGTGGTATAACACTTAAGTCTAAATCTGTTCTCTacaaacacatacaagatcACAAAAATCCAAATATGCTTTGCTGTGACAAATGTCCCAGAATAACAAAAACTGTAGAAGCACTTAACAAACATAAGATGAGGCACATACCAAAATCGgaaagaaaatttatttgttcaacttgtaacaaaatatttgttacaaaaGATGCATTAAAGTCTCATGAAAAGTCACATATTCCTATTGAGGAAAGGAAAATTTATCATTGTGATATATGCGATTTGAAGTTCACAACGCGCTCTTCGGCGGCGTCCCACAAGCGCGTGGTGCACCTCAAGATCAAGAGCTACGTGTGCGACCTGTGTGGCTACGCGTGCGGCACCAACGGCGAGCTGCGCCAGCATCGCGCCATACACAGCGACGACAAGCCCTTCGTGTGCAAGACCTGCTCCAAACCATTCAAAACCCACTCGAACCTCAAGACGCACATGGACACGCACGAGGACACCTCGTACCAGTGCTACGTGTGCAACCGCGTGCTCAACAGCCGCCGCACGCTGCGCAAGCACCTGCTAGTGCACGAGGAGAAATGTCGACACGTGTGCTCCTTCTGTCACAAGGCATTTAAGAGACGCCAGACCCTTAAGGTGCACCTATACACGCACACCGGCGACAAGCCCCTCACATGCAAGTGGTGTGACGAGCGGTTCGCGTACGCGTCCACGCTGCGCTCGCACCGGCTGCGCTGCCACCCCGACAAGATGGCGGCGCAACACAACAGCTACAGCACCTACTCGCACGTACCCATCTCCGCGCCAGTGCCGATGCCCGTGCAAGACGTCAATACGGATTATGTCAAAAATAGCGTGGCGGCGGGTACTGTGATTCTATCGAAAAACGAAGCCGAGGCTATGTAG
- Protein Sequence
- MAVNLKDYCRLCAKKEDFTKELFDANNRSALKLIKDLIQIAINENDELPTKICLNCEEKMVSFQLFILECFKAQESLKKIYLQNSDLGIKLESEIYFGGPDGIKSEVKDEMSAEDIVLCAINNDDNEFIKDDEFNDYSNDNGESDYNDVDDDDDDDDDDEEDDDEEEEDDDYTDNVTLAALKQNKAIIGKPIKTEKRRYRKRYNNYGDPKEVEKVLQKSDLKVRDFVKLQCEICEQKLKSWSDLRVHYFKAHKSKPLVNCICGFVIRSKSVLYKHVSDHKIRNQKSNDNENATKGEVDSKYSSLKIKDFVTFACTVCQKKHSSWYSLKAHTESAHKIAPVVKCICGITLKSKSVLYKHIQDHKNPNMLCCDKCPRITKTVEALNKHKMRHIPKSERKFICSTCNKIFVTKDALKSHEKSHIPIEERKIYHCDICDLKFTTRSSAASHKRVVHLKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCKTCSKPFKTHSNLKTHMDTHEDTSYQCYVCNRVLNSRRTLRKHLLVHEEKCRHVCSFCHKAFKRRQTLKVHLYTHTGDKPLTCKWCDERFAYASTLRSHRLRCHPDKMAAQHNSYSTYSHVPISAPVPMPVQDVNTDYVKNSVAAGTVILSKNEAEAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00681823;
- 90% Identity
- iTF_00682708;
- 80% Identity
- -