Etru017559.1
Basic Information
- Insect
- Eudonia truncicolella
- Gene Symbol
- -
- Assembly
- GCA_949315975.1
- Location
- OX438842.1:569269-574552[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.58 50 5.3 0.0 1 23 172 195 172 195 0.95 2 14 0.025 2.1 9.6 2.5 1 23 241 263 241 263 0.97 3 14 9.8e-07 8.5e-05 23.4 1.5 2 23 349 370 349 370 0.97 4 14 1.9e-06 0.00016 22.5 1.8 1 23 377 400 377 400 0.95 5 14 0.55 48 5.3 0.0 1 23 406 428 406 428 0.89 6 14 0.00077 0.067 14.3 0.2 1 23 434 456 434 456 0.97 7 14 7.7e-05 0.0067 17.5 6.8 1 23 462 484 462 484 0.98 8 14 0.073 6.3 8.1 0.3 1 23 601 623 601 623 0.92 9 14 0.00043 0.037 15.1 3.9 2 23 630 652 629 652 0.92 10 14 1.1e-06 9.6e-05 23.3 2.3 1 23 658 680 658 680 0.96 11 14 1.3e-05 0.0012 19.9 0.5 1 23 686 708 686 708 0.98 12 14 0.002 0.17 13.0 0.6 1 23 714 736 714 736 0.96 13 14 0.0099 0.87 10.8 0.4 1 23 742 764 742 764 0.94 14 14 0.049 4.2 8.6 1.5 1 23 770 792 770 793 0.92
Sequence Information
- Coding Sequence
- atgaataatgaaACTGAACAAATTTTTATCGTTAATACGTCGGATACACTTACGGCGGTGCCGAAAAATATCGAACCAGTTGTGTCAACACAAGGGAATGCAGACTTCTCCACAGCATGCAGAACCTGTGCCACAGTTACAGAGTTTGTTATACCGATATTCGATGGAGAAGGTCTACAAAACAATTTGGCGGATaaaatacacaaacatttacccatCCAGGTATCGGAGAGCGACGTGCTTCCGCTGGTGGTGTGCTACCAGTGCGCCAGCACGCTGCTAGCGTGGCACGAGCTGGTGCAGTGCTGCGTGCAGGCCGACGCCGCGCTGCGAGCCCGCCTGCAGCCCGGCGCCGACCCGGCGGAATCCAAGATAAATAGTACAAATGTAATTCAAAACTCTGAACAAGAACAACAGCCAAAATCACAAACCGAACTTAGTAGTATATTAAAAAACGTATTGGTTGAATATTTACCTAGCCAGTCGACCGCTTGCGAAGACCTCGACTGGGAGTACGTGTGTCAGAGCTGCCCTGCGTCCCTCAGCAGTGTGGAGGCGCTGGCCGGCCACGTGCGGGCGGCGCACGCGGCCGCTGCCACCGGCCGCGACGCTCTCAAGCAATTCATTAACAACAATGTCACATTCGAAGAAATGTTATTCTCCGATGATTTAGACAGAGACGTACAATCGGACGAAGACAGCCCTCCGGTGTTGCCGAATTTCTGTTGCCCTAACTGTGAGAGTGTGTTCTCGTCTACGACGCGCCTGATTTACCACCTCAACCGGCATGCGGAGATATCCATCGACGACGGCATGGTGTGCTGCAAACAAATTTACAACAGCAAGAAAGTGTTTGTACAACACTTGCAAGACGCGCACGTGCGGCGCGCCGCGGACGCCGCCGCCTGCCGCGCCTGCGGGTTCAGGGCGGCGGACGCGCTCGCCCTCCGCGCGCACGTCGCCGAGGTACATGACAACCGAGAACCGAGTGCCACGAAATATAAATCGAAGTCCAGCCCCAAAAATCAGAAATACATCGCCGCAGTATGTCCCGAATGCAATAAATTTTTCTCAAACAAATACAACATGTTCGTTCACATGAAAAAGCACAGCGGGACCGAAGCGACGTTCTCCTGCGACAAGTGCGACAAGCGTTTCAGCAACCGAGGGAATCTGAAGCAGCACAACCGGCTGGTGCACGACGGCATCCTGCGGTTCCCGTGCGCGAGCTGCGGCGAGGCGTTCCCGACGCGGCTGGCGCGCGACGTGCACGCGCGGCTGCACTCCGGCGAGGCGCCGTACGCGTGCGCGCGCTGCGGCAAGGCGTTCCGCGCCCGCAACACGCTCGACCGGCACCTCGACATGCATGTGGACATCAGGAAATACGAATGCCATCTCTGCGAGAAGAAATTCAGAAAGTCGTCCCATCTCAAATACCACGTGCAGTCGCACGGGAGGAAGTCGAACGACCCATGCGGCAGCTGCGGGTCCGGGAACGAGGACGACAAACCTCTGTCGAGGCTAGCGAGCGAAAAGGCGGCAGATTTGTACCACGACTTCTACAGAGCTCTGGTGAATTTTAGAAATCATTTCGCGGAGAAGCACGACCTTCACGATCGGAGCGACTCGGCGTCGGCCGCCTCGAGCGACTCTGAAACGTCGAGCGAGCGGATCGAGCCTGACGCGAGCGTGGACAGCTACGATGACCTGACGCACTGCAACATGCGCCGCGACCGCATGGACGAGGCGACGCGGCTGGAGCTGGCGCGCGTGCGCACGCGCGTGGGCGGGCAGGCGCGGTACGCGTGCCCCGAGTGCGGCAAGCTGCTGAGCTCGCCGCACACGTACGTGTTCCACGCGCGCATCCACTCGGGCGCGCGGCCGTGCGTGTGCCACGTGTGCGGCAAGCAGTTCCGCGCGCCGCACGCGCTGCGCCGCCACCTCACCGAGACGCACGAGCGCGCGCGCCGGCACGCCTGCCAGCAGTGCGGCAAGACCTTCGCCAACTCGCAGAACCTCAAGCAGCACACGCGCATCCACACGGGCGAGCGGCCGTACGCGTGCGCGCAGTGCGGCAAGCGGTTCGCGCAGAGTGGGTCGCTGCATGTGCACGCCAAGACGCACAGCGGCGTGCTGGCGCATGCGTGCCGGGAGTGCGGCGCGCGGTTCCGGCTGCGCGCGGGGCTGGCGCGGCACACGCTGCGGCACACGGGCGAGCGGCCGCACGCGTGCCCGCAGTGCGCGCGCGCCTTCAAGCTGCGGCACGAGCTGGCCGCGCACGCGCTGCTGCACGCCAGCGCGCGCCCGCACGCCTGCGCCGCGTGCCCCGCCACCTTCCgccagcgccgcgccgcccgccagcACGCGCGCACGCACCACGCACACACGCCGCAGCCCGGACCCGCCTACGCCCAACTCGACAACTATTAA
- Protein Sequence
- MNNETEQIFIVNTSDTLTAVPKNIEPVVSTQGNADFSTACRTCATVTEFVIPIFDGEGLQNNLADKIHKHLPIQVSESDVLPLVVCYQCASTLLAWHELVQCCVQADAALRARLQPGADPAESKINSTNVIQNSEQEQQPKSQTELSSILKNVLVEYLPSQSTACEDLDWEYVCQSCPASLSSVEALAGHVRAAHAAAATGRDALKQFINNNVTFEEMLFSDDLDRDVQSDEDSPPVLPNFCCPNCESVFSSTTRLIYHLNRHAEISIDDGMVCCKQIYNSKKVFVQHLQDAHVRRAADAAACRACGFRAADALALRAHVAEVHDNREPSATKYKSKSSPKNQKYIAAVCPECNKFFSNKYNMFVHMKKHSGTEATFSCDKCDKRFSNRGNLKQHNRLVHDGILRFPCASCGEAFPTRLARDVHARLHSGEAPYACARCGKAFRARNTLDRHLDMHVDIRKYECHLCEKKFRKSSHLKYHVQSHGRKSNDPCGSCGSGNEDDKPLSRLASEKAADLYHDFYRALVNFRNHFAEKHDLHDRSDSASAASSDSETSSERIEPDASVDSYDDLTHCNMRRDRMDEATRLELARVRTRVGGQARYACPECGKLLSSPHTYVFHARIHSGARPCVCHVCGKQFRAPHALRRHLTETHERARRHACQQCGKTFANSQNLKQHTRIHTGERPYACAQCGKRFAQSGSLHVHAKTHSGVLAHACRECGARFRLRAGLARHTLRHTGERPHACPQCARAFKLRHELAAHALLHASARPHACAACPATFRQRRAARQHARTHHAHTPQPGPAYAQLDNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00681812;
- 90% Identity
- -
- 80% Identity
- -