Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.8 5.7e+03 -1.9 0.2 16 23 23 30 20 34 0.78

2 8 0.25 3e+02 2.2 0.0 13 22 68 77 60 83 0.83

3 8 2.1 2.5e+03 -0.7 0.1 13 26 113 126 108 141 0.67

4 8 0.00022 0.26 12.0 1.1 5 43 159 196 156 197 0.75

5 8 0.32 3.8e+02 1.9 4.0 6 33 191 218 186 225 0.75

6 8 6e-05 0.071 13.8 2.2 14 43 226 252 212 253 0.89

7 8 0.00029 0.34 11.6 2.2 10 44 251 282 249 282 0.90

8 8 6.7e-06 0.0079 16.8 5.7 1 43 271 310 271 311 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.8	5.7e+03	-1.9	0.2	16	23	23	30	20	34	0.78
2	8	0.25	3e+02	2.2	0.0	13	22	68	77	60	83	0.83
3	8	2.1	2.5e+03	-0.7	0.1	13	26	113	126	108	141	0.67
4	8	0.00022	0.26	12.0	1.1	5	43	159	196	156	197	0.75
5	8	0.32	3.8e+02	1.9	4.0	6	33	191	218	186	225	0.75
6	8	6e-05	0.071	13.8	2.2	14	43	226	252	212	253	0.89
7	8	0.00029	0.34	11.6	2.2	10	44	251	282	249	282	0.90
8	8	6.7e-06	0.0079	16.8	5.7	1	43	271	310	271	311	0.93

Coding Sequence: ATGAGACATAATGTCATCCAAGTACTACTGAATTCGACAGTGATGCCATTTAGGTGGTTGAAGAGTTCATACAGATGCTTTTACTGTTACGAACTGTTTAAGGAGCCCAAAGATCTCAAATTGCATCAAGTGGCACATGTAAACGATAATGATATTAGAGTTAAATCTATGGAGAACTACTGGGAATCAACTGTCTACGTAGATGATTCTAACATAACTTGTAAGCTTTGCCCGACACCTATTAAAGATCTGTACGATATAATAGACCATTTGATTATCAATCATGACATATCTTTCAACAAAGATATAGGCGTTTGTATGAGTCCGTTTAAAATGAACGATCTGTCAGTGGAATGTGTCGTATGCAGTAGTTCCTTTAAGACTTTTGGTCATCTACTGCTCCATATGAATAAAGAGCACGAAGGTTATTATCAAGTATTGTGCGATGTTTGCGGGCAGCATTGCAGAAACAAAAACCATTTGCGAGAACATAAAAGAGAACATTTGAATAAAAGCATCGCTTGCAACATTTGCGGGGAGGTTTTGAGCAGTTACTACAAACTGAGGCCTCACATGCAGAACGTTCACGACAAGAAATACAAGTGTACAATATGCTCGGAAGTGTTTGAGACGCATTACAAGAGGTCGATGCATATGATGGTCGAACATAAGAACAAGGAGGAGGTGAAATGCCAGTACTGTGATAAAACGTTTGTTTTTCGTAGCACGATGATGGCACACCTTCGCGAGACACATTTGCAAGAGAAAAATGCGATTTGTAGTATCTGTGGATGGAGGACTGTGGGTAAAAGCAAGTTGTTGCGGCACATGGCAGCTAAACATAACACTGAGAAGGTGTTTAAGTGTCCGCACTGTGAGAAAGCGTATAAAGCAAAGAAGAATATGTACGCGCACATTAGGAAAGTGCATGGGAAGAGTTCTGCGTAA
Protein Sequence: MRHNVIQVLLNSTVMPFRWLKSSYRCFYCYELFKEPKDLKLHQVAHVNDNDIRVKSMENYWESTVYVDDSNITCKLCPTPIKDLYDIIDHLIINHDISFNKDIGVCMSPFKMNDLSVECVVCSSSFKTFGHLLLHMNKEHEGYYQVLCDVCGQHCRNKNHLREHKREHLNKSIACNICGEVLSSYYKLRPHMQNVHDKKYKCTICSEVFETHYKRSMHMMVEHKNKEEVKCQYCDKTFVFRSTMMAHLRETHLQEKNAICSICGWRTVGKSKLLRHMAAKHNTEKVFKCPHCEKAYKAKKNMYAHIRKVHGKSSA

Sequence clustering based on sequence similarity using MMseqs2