Emer034425.1
Basic Information
- Insect
- Eudonia mercurella
- Gene Symbol
- -
- Assembly
- GCA_963082485.1
- Location
- OY720047.1:4746418-4751793[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.1e-06 0.00035 22.0 0.7 1 23 284 306 284 306 0.98 2 11 0.00024 0.027 16.1 3.7 1 23 397 420 397 420 0.97 3 11 0.00011 0.012 17.2 2.1 1 23 424 446 424 446 0.98 4 11 0.0039 0.45 12.3 0.2 2 23 468 490 467 490 0.93 5 11 0.0054 0.61 11.8 0.4 1 23 494 517 494 517 0.97 6 11 0.019 2.2 10.1 0.2 2 23 540 562 539 562 0.93 7 11 1e-05 0.0012 20.4 2.8 1 23 572 594 572 595 0.96 8 11 0.0013 0.15 13.8 1.7 2 23 610 631 609 631 0.96 9 11 0.01 1.2 11.0 0.4 1 23 637 659 637 659 0.94 10 11 0.67 77 5.2 2.0 1 22 665 686 665 689 0.90 11 11 0.029 3.3 9.5 0.0 2 23 736 757 735 757 0.97
Sequence Information
- Coding Sequence
- ATGTCTGATCAAGGCGCCACAATGGAAGGAACGGAGTTTAATAAACCAACACAAACATTAAAAGACTTACTTGTTAAGCAAGAAACCGAAATTGCACTAACTGAGAACAAGTTTCCAGATGTCATGGTGCAAATTAAGAATGAAAATATCACAGAAGAAATGCATTTAAGTGATGGTACTAATGAGCTAGGCCAAGTTTTAGATGTTAAAGAAGAAATGCAGAGTGATTTTGATCGAGATATAGCATCATCAGAGGAACTTGTCTCTAGTAATTTTACGTTAGAGATGTCAGAGATAGAAAGTAATACTGAAGTAAAAGATGAATTATCAATGGGTGATGAAGCATTAATATCATATGATTATCCTAATTTTGATGACGCAGGGAGTATTGATAGCAATGATATTGCAGTTTTAGGCAATGTGGAAACATGTCTACATGAAGATTACAGTATCAAGTCAGAAACACAAACAGATTTTGAGGGTCACCAACACAGACAAGAGTTTAGCAAACACGGCATCAAAAAAGAGGCAGAAATAGTGACAGAAACTCACCTGATTTCAAACAAACTTATCAACACCACATCAACTATTACCAACCCACATGATGGTGCAATTGAATCACAAACCACAAAGACCTTGGTTATGGAGATCTTACCCATCCCACATAGCTCCATGCCTCTATCTAAAATGGGCACCCCTGAAGAGATACTTCCTACATCTTACAATCATGAAATGGAGTATGAAGATATGTTCCAATTGAATTCAATAACTGGCAATGTACTATCATTGGAGCAAGAAGCGTACGGATTGCTTAAAGCAAAGAAAAACATAGTGCAGCCATCTAAAAGTTATCAATGTCCTAAGTGTTCTAAAGAGTGCAAAAATGCAGCTGCCCTGAGGAAGCATATGGCTGTTCACAAAACTATTGAACGACGAGTAATGGGTGTCATAAAAGGCCAGAAGACGAGAAAGGAGAATCTCAAGAAACGTTATGAGAAGGAGAAAGTCGCTGCATGTGACTCAAAAGTCCAGAGTGTTAAGACAGAAAAATTTGAAGAAGATATCAAACCAATTATAAAGAAGGAGGGGTATGAATGCACGTGCGGCCAAGTTTTCCAACGGCGAAGCAGAATGGAGACGTGTTTACGGACGCACGAGTTTTATTCAGACACGAAATCAAAACCCTGGCACCAGTGCGTTACATGCTTGAAACAGTTCAAAGACAAAAGCGAACTTTTCGCCCATCGGAGGAGGTCACACCGAAAGAAGTTTCAGTGCAAATTTTGCCCAACCGACTATAGTACGCGTAAAGAGCTTTTCAAACATCTACAAATACACCAGAAAGTGCAACTAATGGAGTACAAGGTGATATCGGAGGTGGTGCAAGGGAAACAGAAGCTGCAATGTTTCATGTGCGCCAAGAGTTATTCTGAACTGTCGGAATTGAAGTCGCACGTCATGGAGGACCACAAAAGCCCTTACATATGCCCTAATTGCAAAAAAATGTTCCCAAAGATCATAGAGTTTGGTAACCATGTGAAAACTTATCACCCAGAAGTGGGTGGGCAGTCAGTTTTGGATGTCCTCGAAGCTTTTTCGATGCTAGTGAAAGCTTGGAAGTGCGAAGAGTGTGGTTTGCAATTTCACGAAGCTGATAAACTGGCATTACATCAAATTGAGCAACACAGGCCTGCCTTCAAGGTGGATCCCCAATTCCAGTGCACAGATTGCCGTAGAGTATTCATAAGTCAGAAAGGCTTGACTTCGCATAGACGGGTCCACCATAGTGACAATGTTGAAGTGACTGAGCCAGCAGAGAAAGGTATAATGTGCTTGGAATGCCGGAAGATATGTAAGGATATGGACTCTTTGACATCACACATGCGATTGCATTCCCCCGACAGGAAATATCCTTGTAAGTTCTGCGACTTTCGATTTGCCACGCCAGAGAAGAGGAAAGCGCATGCGGAGTTGCATACGGGCGATATGAAATACGTATGTTTTATATGCGAGTACCAGTGTAGTTCGGAGAACCGTTTGGCGCAACACAAAATGTctttgaaacatataaatatgaaGGAGTTTTTGCTAACTGGCAGGCCATTGATTGAAGAGGAACAGTCTACATCAAAGCCCAaagctaaaaagaaaaaagaggagagaaagaaaaaagagGATATGGATAGTGGTGGTGGGGGAAATGTACCTTGTGACATTTGTGGAGACAGTTTTGCGAGTGAAGAGTTAATGCTGGAACATAAACAGACTCACCCGTTTATAGAGTTTCCGAATGACGATAAACCCAGTAGAATATTCTTTAAGTGA
- Protein Sequence
- MSDQGATMEGTEFNKPTQTLKDLLVKQETEIALTENKFPDVMVQIKNENITEEMHLSDGTNELGQVLDVKEEMQSDFDRDIASSEELVSSNFTLEMSEIESNTEVKDELSMGDEALISYDYPNFDDAGSIDSNDIAVLGNVETCLHEDYSIKSETQTDFEGHQHRQEFSKHGIKKEAEIVTETHLISNKLINTTSTITNPHDGAIESQTTKTLVMEILPIPHSSMPLSKMGTPEEILPTSYNHEMEYEDMFQLNSITGNVLSLEQEAYGLLKAKKNIVQPSKSYQCPKCSKECKNAAALRKHMAVHKTIERRVMGVIKGQKTRKENLKKRYEKEKVAACDSKVQSVKTEKFEEDIKPIIKKEGYECTCGQVFQRRSRMETCLRTHEFYSDTKSKPWHQCVTCLKQFKDKSELFAHRRRSHRKKFQCKFCPTDYSTRKELFKHLQIHQKVQLMEYKVISEVVQGKQKLQCFMCAKSYSELSELKSHVMEDHKSPYICPNCKKMFPKIIEFGNHVKTYHPEVGGQSVLDVLEAFSMLVKAWKCEECGLQFHEADKLALHQIEQHRPAFKVDPQFQCTDCRRVFISQKGLTSHRRVHHSDNVEVTEPAEKGIMCLECRKICKDMDSLTSHMRLHSPDRKYPCKFCDFRFATPEKRKAHAELHTGDMKYVCFICEYQCSSENRLAQHKMSLKHINMKEFLLTGRPLIEEEQSTSKPKAKKKKEERKKKEDMDSGGGGNVPCDICGDSFASEELMLEHKQTHPFIEFPNDDKPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00683606;
- 90% Identity
- iTF_00683606;
- 80% Identity
- -