Emer035307.1
Basic Information
- Insect
- Eudonia mercurella
- Gene Symbol
- -
- Assembly
- GCA_963082485.1
- Location
- OY720048.1:11239340-11251240[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.99 1.1e+02 4.7 0.5 2 23 131 152 130 152 0.94 2 15 0.0059 0.68 11.7 0.4 1 23 159 181 159 181 0.97 3 15 9.1 1e+03 1.7 0.1 1 23 185 208 185 208 0.90 4 15 0.00038 0.044 15.5 0.3 2 20 213 231 212 233 0.94 5 15 0.00048 0.055 15.1 2.3 1 23 241 263 241 263 0.97 6 15 0.00014 0.016 16.9 3.5 2 23 269 290 268 290 0.96 7 15 0.0056 0.65 11.8 0.7 2 23 295 316 294 316 0.97 8 15 0.00056 0.065 14.9 4.2 2 23 328 350 328 350 0.95 9 15 0.0027 0.31 12.8 0.2 1 23 358 381 358 381 0.94 10 15 0.004 0.46 12.2 0.2 6 23 392 410 390 410 0.95 11 15 5.1 5.9e+02 2.5 0.1 3 10 421 428 419 430 0.87 12 15 0.085 9.7 8.1 0.3 6 23 450 468 448 468 0.95 13 15 1.9 2.2e+02 3.8 0.4 1 12 477 488 477 491 0.81 14 15 6.1e-06 0.0007 21.1 3.1 1 23 490 512 490 512 0.97 15 15 0.011 1.3 10.8 3.0 1 23 517 540 517 540 0.96
Sequence Information
- Coding Sequence
- ATGGAGAATGCGGAATCCGGATCGCCGGTTTGTTTAGTGatacaagaaataatttacGTAAAGCCTGAAATCATTGACAGTGGAAGTGATgagaacattattatttatgaaaatattaacataaagTCAGAGAACGATACAGAGGAATCGAATGCACAGGAAGATAAAGAATCTTTAAAGGAAGTCCCATTAAAGGAAAGCAAATCGTCTACCAGGAAGAGGAAAAGCCATCCAAAAATTAAAAGTATAGAATCTAGTGCAGCTAAAAGTCCCGACGACGTACTATCTGCCAACGACATAATAATGTACATAGAGATGATAAAGCTCACAGAGGAAGAGCGTCAGGCCGAACACCGAGGGGTTATGGAGCGGTTGATAGGCAGCCATAGTGTGTGTGATGGGTGCGAGCTCGGGTTCACATGCGACAAGGATTTTGAGGCACATTTGAAGCTACATTCCGATGATCAAGGCCCGTTCAAATGCGACATATGCCGCGTACGCTTTGAATTGGCCAGCTCTGTGGAGAAGCACCGTTTGCAGCATTACGCTAGCTACCGCTGCATGCTGTGCCGGGCTGTGCTGAAGGACTATGAGCTGGCAGCGACCCACGTGGCTAGAGAACACGTCGGCCGGGTGCGATGCCCTATCTGTAACCGAGGATTCAAGCGCGCGATCTGCCTCAGCAAGCACATCGAGCAGTGCCGCACCGCGCCCAAGCAGCACATGTGCCCAGTGTGTGACAAGCTCTGCGACGGGAAGCCGCAGCTCAGCAAACACATGAGGAGTCACTCGCCCCATTCCCTGAACTGCAACACATGCCACCTTCAGTTCAAGAGCCGTTACGCCCTGCGGCGACATTTGCTCACTCATGAGGCGAGCGTCCGCTGCTCCGCTTGCGACCAGCTCTGCAAGAACCCGCAGACCTTGGAGGTTCATATGTTGACGCATAGCAGGAGGCAGAACAAGAAGCTGGCGGAGGCGCGCTGCCCGCACTGCGAGCGCGTCTGCTCCAACCGGCAGATGCTCAAGCGGCACATCGTACGGATGCACGCGCTGGACAGGGAGAAAaaATTCGAGTGCGACTACTGCGGCAACCGGTTCATGACCAAAGGCGAGGCGCGCGAGCACATCTCGTGGACGCACATGGGCGCCCGCCGCGCGCACGCGTGCCGCTGCGGACGCGTGTTCCGCACGCCGGCGCGCCTGCGGGCGCACGTGGCCACCAGCCATATGCACAAGACGATGGTGAAGGATCATCTTTGTGATGTCTGCCAGAAGGCGTTCCCGCTATATGCACCATGCTGTAGAGGATCATCTCGTCGACGCACATGGGCGCCCGCTTGCCGCTGCGGCCGCATGTTCCGCACACCGGCAAGGGTACGGGCGCATGTAGCCACCAGCCACATGCACAAGTCGAATGTTAAAGATTATCTTTGTGACGTCTGCCAGAAGGCGTTCCCGCTGAATCATCACTGCTACTACTGCAACAAAGTATTCCCGTCCAACTCGGAAATGAACCGGCACAAGCGCACGCACGCCGGCACTCGCTACCCGTGCCCGGAATGCGGGGATACGTTCAAAACACGCAACTACGTCCACATTCACCACAAGCTCAAACACATGAACATGACGCGAGAAGAAATCAGGCAGCAAAACAAGCAGAAACGAGAACAGCGTATGCAAGAGATCGCTAAAGCGCACAAGAAGAAAATTAGAATAGTCTACAATCAGGAACGCGAATCTAAAAATGTTCGCGACAAGATCGGGTTCGTTCGCGAACCGAAGGACTGTGTGGCTGATGTTAGTGGTAATCGCAAATGTAAAGATAAGAAGATCAGTGTACCCAAGTTTGATACTTTTGTGGATGTGCTGAAAGATAAtgattaa
- Protein Sequence
- MENAESGSPVCLVIQEIIYVKPEIIDSGSDENIIIYENINIKSENDTEESNAQEDKESLKEVPLKESKSSTRKRKSHPKIKSIESSAAKSPDDVLSANDIIMYIEMIKLTEEERQAEHRGVMERLIGSHSVCDGCELGFTCDKDFEAHLKLHSDDQGPFKCDICRVRFELASSVEKHRLQHYASYRCMLCRAVLKDYELAATHVAREHVGRVRCPICNRGFKRAICLSKHIEQCRTAPKQHMCPVCDKLCDGKPQLSKHMRSHSPHSLNCNTCHLQFKSRYALRRHLLTHEASVRCSACDQLCKNPQTLEVHMLTHSRRQNKKLAEARCPHCERVCSNRQMLKRHIVRMHALDREKKFECDYCGNRFMTKGEAREHISWTHMGARRAHACRCGRVFRTPARLRAHVATSHMHKTMVKDHLCDVCQKAFPLYAPCCRGSSRRRTWAPACRCGRMFRTPARVRAHVATSHMHKSNVKDYLCDVCQKAFPLNHHCYYCNKVFPSNSEMNRHKRTHAGTRYPCPECGDTFKTRNYVHIHHKLKHMNMTREEIRQQNKQKREQRMQEIAKAHKKKIRIVYNQERESKNVRDKIGFVREPKDCVADVSGNRKCKDKKISVPKFDTFVDVLKDND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -