Emer028831.1
Basic Information
- Insect
- Eudonia mercurella
- Gene Symbol
- su(Hw)
- Assembly
- GCA_963082485.1
- Location
- OY720041.1:11101578-11110464[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.091 10 8.0 0.3 1 20 41 60 41 62 0.95 2 13 0.0054 0.63 11.8 5.9 2 21 81 100 80 103 0.88 3 13 0.19 22 7.0 0.9 3 23 112 133 111 133 0.95 4 13 0.00024 0.028 16.1 3.4 1 20 138 157 138 159 0.96 5 13 2.9e-07 3.3e-05 25.3 0.1 1 23 170 193 170 193 0.98 6 13 0.0075 0.86 11.4 4.6 1 23 199 222 199 222 0.94 7 13 5.9e-05 0.0068 18.0 0.1 1 23 228 250 228 250 0.98 8 13 0.0021 0.24 13.1 0.9 1 23 255 277 255 277 0.96 9 13 0.0002 0.023 16.3 0.7 1 23 283 305 283 305 0.97 10 13 4.1e-05 0.0047 18.5 0.9 2 23 309 330 309 330 0.97 11 13 0.12 13 7.6 0.9 3 23 338 363 336 363 0.87 12 13 1.9e-05 0.0022 19.5 3.2 1 23 369 391 369 391 0.99 13 13 7.1 8.1e+02 2.0 0.7 3 23 399 422 398 423 0.80
Sequence Information
- Coding Sequence
- ATGCCGCCTGAACGCAAGAAAACGGCTAATCAAAAAGGATACAAGAAGAGAAAAGTGattaagaaagaaaagaagaatGTTATCGCCCCAAACGATATTACAAAGTATCCTGTTATTAATTTTACCTGTAGTGTTTGTAATGACTCTTTTAAAATTGTGTCTGAACTTCGGGATCATTTAGTCCATTGTAAGAAAAGTTCGATGGCCATGGCACTCCGAACACTATCTCGGccAGCCCTTAAGTGCAGTGAgtgcaataaattttttaagtatAAATCAAATTTTCTTAGCCATTGTAAAAATGAACACTCCAAAAATCGTGCCAGTGTGGCCTGTTCAATGTGTAATGCACGTTGTCCGAACAAAATAGTGTTGCTGAAACATATTCAACAAACCCATAACAGAGATGAGTATGTTTGTTGTCActgcaaaaaaacatttgccAGACGCGCTCATGTCCTGAGACATATGGCACAGAGTGGATGTGATGGATCAGAAGCAACTACATACCCATGTGAAatatGTCCTGCAACATTCTCTAGAAAGGACAACTTGATTGTACACCTTCGCTCTCAACATGTTTTAAGAAAGGACTACACCTGTAAGCATTGCTCATATGCAACGAAGAACTTTTCCAAGCTCATCAGGCATTGGCAGTTTTATCATTTATtTCCTCAGCTGTTTGAATGTGACATTTGTGGGAAAACAACTGCTTCTCGCACTTCTATGGCGAAGCATTTGGAAATACATGGAGAAAAAAAGCACTCTTGTGATGTGTGCGGCTACAAAACGTTCACGGCTGAAGTGCTGAAACGGCACGTGCTGACCCACGCTAAGGACAAGCCGCACAAGTGCGACGTGTGTGGCGTGTCGTACATCCAGCGGCTGCAGCTGCTACGTCATCTGGCCAAGCACACGGAGAACGTCTGCAAACAGTGCGGAGAAGCGTTCCCCACTCAATCCAGGTTGCTGGTCCATCAAAGACATCATATGGGCTTAGACCGATTAGTCTGCCCagtaaaaaattgtaattctTCAAAGAAAGAATTCACCAATGAATCAAGTTTACATGGTCATGTGAAAACACATTTGGTTTCAAAAGACTACAAATGCGAGGTGTGCGAGAAGAGCTTCTGCTCGGAGATGAACATGAAGCGGCACGTGTCGACGCACCGGCTGGACCGGCCGCGCCGCTGCATGTACTGCGTGACCGCGCGCGCCTACATCCGCGGCGAGCAGCTGCTGCGGCACGTGCGCCTCCAGCACCACGACCTGTTCCGGCAGCACCTGGCGCACGTGCGCCGCGTACTGGGCACCGACATCAACGTGACCCGCGTAAAGAAGTCGGAGATGGAGTCGATCTTGAACGTGCTCGACGCGGAGTCGGACCGCATCATGGACGGGTACGGCGGCTCCGACGTGCTCTATGGGGGCGTGCAGGAGGAACCACTACCTGCCAAGGACTCCAAGCAATTCATCAAGatcGAAGATAATCCTTTGATGACCGAACAAGAGCTGGAGGAGAACCTGAAAATGTTGCTGCAACAGCTGATTCACTTCGACACCCTCAAGTGTTTCGGCTGGCCGGAAGAGTCCGTCGATTCGGTATTAGAGAAGGTGATCGAGCACTGCGGCGCCAAGAGCGCCGACCCCGACCGGTGGACGCGCGTGCAGCGGCTGCGCGAGAACGCCAAGCACCTGTTCCTGTACGCCGTCGAGGACAAGCACATCGCGCGCATGCTGGACACGCACACCATCGACCAGGTCGTCAAGCATATCCTCACGCAGGTGGCGCAGGACCAGGTCTAG
- Protein Sequence
- MPPERKKTANQKGYKKRKVIKKEKKNVIAPNDITKYPVINFTCSVCNDSFKIVSELRDHLVHCKKSSMAMALRTLSRPALKCSECNKFFKYKSNFLSHCKNEHSKNRASVACSMCNARCPNKIVLLKHIQQTHNRDEYVCCHCKKTFARRAHVLRHMAQSGCDGSEATTYPCEICPATFSRKDNLIVHLRSQHVLRKDYTCKHCSYATKNFSKLIRHWQFYHLFPQLFECDICGKTTASRTSMAKHLEIHGEKKHSCDVCGYKTFTAEVLKRHVLTHAKDKPHKCDVCGVSYIQRLQLLRHLAKHTENVCKQCGEAFPTQSRLLVHQRHHMGLDRLVCPVKNCNSSKKEFTNESSLHGHVKTHLVSKDYKCEVCEKSFCSEMNMKRHVSTHRLDRPRRCMYCVTARAYIRGEQLLRHVRLQHHDLFRQHLAHVRRVLGTDINVTRVKKSEMESILNVLDAESDRIMDGYGGSDVLYGGVQEEPLPAKDSKQFIKIEDNPLMTEQELEENLKMLLQQLIHFDTLKCFGWPEESVDSVLEKVIEHCGAKSADPDRWTRVQRLRENAKHLFLYAVEDKHIARMLDTHTIDQVVKHILTQVAQDQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00683613;
- 90% Identity
- -
- 80% Identity
- -