Emer035892.1
Basic Information
- Insect
- Eudonia mercurella
- Gene Symbol
- -
- Assembly
- GCA_963082485.1
- Location
- OY720049.1:3687058-3702846[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.063 7.2 8.5 1.5 1 23 200 222 200 222 0.96 2 18 4.5 5.2e+02 2.6 0.2 3 23 246 267 244 267 0.92 3 18 0.00079 0.091 14.4 1.9 2 23 290 311 289 311 0.96 4 18 0.039 4.5 9.1 1.9 2 23 316 337 315 337 0.96 5 18 0.11 12 7.7 0.9 1 23 344 367 344 367 0.83 6 18 0.00078 0.09 14.5 3.8 1 23 373 396 373 396 0.97 7 18 0.0014 0.16 13.7 4.4 1 23 402 425 402 425 0.97 8 18 1.4e-05 0.0016 20.0 1.0 1 23 431 454 431 454 0.98 9 18 0.021 2.4 10.0 2.6 1 23 539 561 539 561 0.96 10 18 4.5 5.2e+02 2.6 0.2 3 23 585 606 583 606 0.92 11 18 0.0018 0.21 13.3 2.0 2 23 629 650 628 650 0.96 12 18 0.039 4.5 9.1 1.9 2 23 655 676 654 676 0.96 13 18 0.002 0.23 13.2 0.8 1 21 683 703 683 706 0.82 14 18 0.092 11 8.0 4.7 1 20 712 731 712 735 0.83 15 18 0.0096 1.1 11.0 3.4 1 23 741 764 741 764 0.96 16 18 6.9e-06 0.00079 20.9 3.0 1 23 770 792 770 792 0.98 17 18 0.00019 0.022 16.4 5.9 1 23 798 820 798 820 0.98 18 18 3.8e-06 0.00044 21.7 1.8 1 23 826 849 826 849 0.98
Sequence Information
- Coding Sequence
- ATGATACGGTTTTCAGTACGCAAGTCTAAATTAATTGCTGCTCTCTCTGCACGCCTTGGTCATGGTGAATTGGACTCCAAGCTTAATATCGAAGTGAAAGTAGAAGCAACTGCTGAGACCTTGCCACTCTGcaacgatgatgacgatggaaGGGATTATGAAGATAATGttcccGTAGCTGAAGAGTCATTGGACACCACAGTCGGTTTCAAAATAAATGTGAATGATGTTGAAGACACGAAGCCTTGTAATCTAGCTGACAATATGTTCGTTATAGAAGAAAGCATTCTAGAAGTTTCTTCAGAGGACTTCATGCCTCCGGAAAAGAAAACGCCCAAAAAAAAGAAGACATTAAAAACTCGTAtcaaaagaaagaagaagaggGAAGAGAGCAACGAAGATGAGAAAGAAAGAGAAGAGATGCTTGAAAACCCCACAAGGAGGAGCGACAGGCTTCGGGGTATGCAGGAATCAGaTGACATACAGCAAACTACAGTAAAGACAAAGTCTACGGACAACGAGCACAAAGCGTTTTTCAACGCATCAATAATAGTCGAGAATTCGTACGCTTGCCCATTCGACACTTCCTTCAGTGACTATTACTGCATTTACTGCCGTGAAATCTTTATCGACCCCTGCAAACTGCGAGAGCACACACTAACCCACGATCCTACCACGTTCAAAGAGATCGCCGTAGCAAAAACACTATTGCAAATCGATATTTTCCGCATCGATTGTCGATTGTGCCCCAATAGAATCGATAATCTTGACTCGTTCAAAAGTCACATCACTAATGACCACGGTAAAACTTTGTTTGTTGGTGTGACCAAAGAGTTTTTGCAGTTCAAATTGACGAAAACGAGTTTGTCTTGTTTAGAATGTGGCagcagttttagtttttttcacgCTTTAAAGAAACATATGGCGAAGCACTTCGGTGTTTGTATATGTGATGTGTGCGGTGCGCATTTTTTCGAAGAGAAATCGCTAGTGTTGCACCAGAAGAGTCATCAGAGAATCGGGGAGCGTTACGCTTGTATGGAATGTGAGAAGAGTTTCAAATCGAAACTTAAGAGGTACTTACATGTAGCGAGAACGCATAAGAAGAAACCAGTCTTCCAGTGCTCTAAATGTGATGAGTGCTTTTCCACGTACTCCTTAAGGTACAGACATTTGATCAAAGCACACGGCGAGCAGAGAATGTTTTCGTGCGAACACTGTGACAGAGCTTACGATACCAGAAAGTCTTTAATAGGACACCACAGACGGTTtcatttgaaaattttgaaacaCCAATGCGATTTGTGCGACAAAAGGTTCTATATACCATCGCTGCTTAAACAACATATTATGACCGTTCATGCTCGTGAAAGGAATTATCGTCATGGTGAATTGAACTCCAAGCTTAATATCGAAGTGAAAATAGAAGCAACTACTGAGACCTTGCCGCTCTGCAACGACGATGACGATGGAAGGGATTATAAAGATAATGataacataaaacaaacaacagtaAAGACAAAGTCTATGGACAACGAGCACAAAGCGCTTTTCAACGCAACAGTGTTAGTCGAGAATTCATACGTTTGCCCATTCGACAATTCCTTCAGCGACTATTACTGCATTTACTGCCGTGAAATGTTTACTGACCCCTGCAAACTGCGAGAGCATACACTAACCCACGATCCTACCACGTTCAAAGAGATCGCCGTAGCAAAAACACTATTGCAAGTCGATATTATCCGCATCGATTGTCGATTGTGCCCCAACAGAATCGATAATCTCGACTCGTTCAAAAGTCACATCACTAATGACCACGGTAAAACTTTGTTTGTTGATGTGACCAAAGAGTTTATGCAGTTCAAATTGACGCAAACGAGTTTGTCTTGTTTAGAATGTGGCAGCAGTTTTAACTTTTTTCACGCTTTAAAGAAACATATGGCGAAGCACTTCGGTGTTTGTATATGTGATGTGTGCGGTGCGCatttttttgaagagaaatCGCTAGTGTTGCACCAGAAGAGTCATCAGAGAATCGGGGAGAGTTATGCTTGTAAGGAATGTGGGAAGAGTTTCAAATCTAAACTTAAGAGGTACTTACATATAGCGGGAACGCATAAGAAGAAACCAGTCTTCCAGTGCTCTAAATGTGATGAGTGCTTTTCCACGTACTCTTTAGGGCATAGACATAAGACCGAGGCGCACGGCGAGCAGAGAATGTTTTCGTGCGAACCCTGTAACAAAGCTTACGATAGCAAAAAGACGTTAAGAGAACACCACAGACGCTTtcatttgaaaatttttaaacaccAATGCGATTTGTGCGACAAAGGGTTCTGTATGCCATCGGATCTTAAAAAACATATGACCGTTCATACTGGTGAAAGGAATTATCGTTGTGAGTACTGTGCGAAGAGTTATCGTAGAAAGTGCGCTTTGAAAGTCCATATGCATTCGCATAGCTCGGAGAAGAGGTTTAAGTGTGTTATATGTAACACTTCGTTTACCCAAAATGGCAGTTTGAAGTATCATATGCAACGACAACACCAGAGCTTGGATGACAGTTATCATGAATGA
- Protein Sequence
- MIRFSVRKSKLIAALSARLGHGELDSKLNIEVKVEATAETLPLCNDDDDGRDYEDNVPVAEESLDTTVGFKINVNDVEDTKPCNLADNMFVIEESILEVSSEDFMPPEKKTPKKKKTLKTRIKRKKKREESNEDEKEREEMLENPTRRSDRLRGMQESDDIQQTTVKTKSTDNEHKAFFNASIIVENSYACPFDTSFSDYYCIYCREIFIDPCKLREHTLTHDPTTFKEIAVAKTLLQIDIFRIDCRLCPNRIDNLDSFKSHITNDHGKTLFVGVTKEFLQFKLTKTSLSCLECGSSFSFFHALKKHMAKHFGVCICDVCGAHFFEEKSLVLHQKSHQRIGERYACMECEKSFKSKLKRYLHVARTHKKKPVFQCSKCDECFSTYSLRYRHLIKAHGEQRMFSCEHCDRAYDTRKSLIGHHRRFHLKILKHQCDLCDKRFYIPSLLKQHIMTVHARERNYRHGELNSKLNIEVKIEATTETLPLCNDDDDGRDYKDNDNIKQTTVKTKSMDNEHKALFNATVLVENSYVCPFDNSFSDYYCIYCREMFTDPCKLREHTLTHDPTTFKEIAVAKTLLQVDIIRIDCRLCPNRIDNLDSFKSHITNDHGKTLFVDVTKEFMQFKLTQTSLSCLECGSSFNFFHALKKHMAKHFGVCICDVCGAHFFEEKSLVLHQKSHQRIGESYACKECGKSFKSKLKRYLHIAGTHKKKPVFQCSKCDECFSTYSLGHRHKTEAHGEQRMFSCEPCNKAYDSKKTLREHHRRFHLKIFKHQCDLCDKGFCMPSDLKKHMTVHTGERNYRCEYCAKSYRRKCALKVHMHSHSSEKRFKCVICNTSFTQNGSLKYHMQRQHQSLDDSYHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -