Emer034785.3
Basic Information
- Insect
- Eudonia mercurella
- Gene Symbol
- -
- Assembly
- GCA_963082485.1
- Location
- OY720047.1:12669486-12672174[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.23 27 6.7 2.1 1 23 170 192 170 192 0.98 2 16 2.4e-05 0.0028 19.2 0.4 1 23 197 219 197 219 0.98 3 16 0.0025 0.28 12.9 0.1 2 23 250 272 249 272 0.95 4 16 4.5 5.2e+02 2.6 0.1 2 11 279 288 278 291 0.87 5 16 0.66 76 5.3 0.4 2 23 329 351 329 351 0.96 6 16 0.017 1.9 10.3 4.1 1 23 357 380 357 380 0.97 7 16 2.2e-05 0.0025 19.4 1.2 1 21 384 404 384 405 0.96 8 16 0.0025 0.28 12.9 1.7 1 23 413 436 413 436 0.96 9 16 0.00059 0.067 14.9 3.9 2 23 441 463 440 463 0.94 10 16 1.1e-06 0.00012 23.5 0.4 2 23 492 513 491 513 0.97 11 16 0.00091 0.1 14.3 0.2 2 23 518 538 517 538 0.96 12 16 0.059 6.8 8.5 0.0 2 23 557 579 556 579 0.96 13 16 0.13 15 7.5 3.7 1 21 585 605 585 607 0.95 14 16 0.0062 0.71 11.6 1.4 2 23 614 635 614 635 0.97 15 16 0.0013 0.15 13.8 0.2 1 23 641 664 641 664 0.95 16 16 0.0076 0.87 11.4 2.1 1 19 669 687 669 692 0.93
Sequence Information
- Coding Sequence
- ATGAGTACAAAGCGTAATTCACCAAAATGcaacaaatcaaaacatccAGGTATATTGGATAGATTCGAGATCATaaagcaaaaatttaaaaatgctcTTCTTAATAGAGTTTTCTGTGGTATTTGCATAAAATCTGATGAAGATATGATTTCGGTGAATGTAGAAATAGAATTAAATGCACTTCACCAGAAGATTATTCTGAAAGACgtgatagatattttttttaataacAGCGCGATCTTAACCAGTGAATATGTCTGCGACAAATGTGTAGATAAactaataagtttttatatgtttgttgCTGATACAAAGTTCACTGCTGATGTTTTTAACGTTTACCTCAAGAATTTATCAGATAAATTGTACAGTTGCAATTTGTCAACAGTGGAACCTCTATCTGGTTCAAAAGCTGCATTAATCTTAGACAATAGTGCCATAATGAAATACTTTCCAGAAAAAAATCATATTGAATGTAAAAGTGTTGAGAAACAAGACTATAAGTCCTATAAGTGCCCTGAGTGTAGTTACATTAATAACAGTTACAAAGAGTTTTTACAACACAAGAAAACTCATAGGAAGTCTGAATATGCATGCACAATCTGTGAGAAAGTATTTAAAAACGATGAGTTCTTGACAGTGCATTATAGAGTACATTCAGTGATTCGGTGTAAACTTTGCTATGAAGTCATACCTGAAGTGAACTTGAGTGATCATTTGAAGAAGCAACACAACGAATCTGTCTTAGAATGCCCTTTCTGTAATGTTGCATTCTATAACAAACGAGCTTTAGACACTCATGTGAAAGTTAGCCACAACAAAGATGTAAATCAGCAATGTCCAATGTGCTTAAAACGTTTCATAGGTAACGACGTAGACACCCATCGATGCAGATTCACTTGTCCACAATGCAAAGTTATATGTTGCAGACACTTTGAATATTTGATGTCTTACAGGGATCAAAAATTGAAAGGTAACAAAGCAAAATGTCTTAACTGTGATTTTGTCACTGGCAAAAGAGATTCATTTCTCGGACACATAAATAGAGTGCACTTGAATTATCTTCCATACTCTTGTAAGCAATGCACTCTGAAATTCAATTCTAAAATGAACCTCAATTGTCATATTCAACGTGCTCATAAAGAAATTTTCAGTTGCGGATATTGTGATCAAGAATTTAAAGACAAAAAGGAATTAGAGAGACACATTAAACATTGCCAATTGATCAAACGTGATTActcatgtaaaaaatgtttggctTCATTTAATACTTCGAACGAATTATTAAACCACACTAACTATAGGCATAACAATCTATGCCAATGTCAAATATGTAATAAGGAATTTACATTCAAATCCAGGTTGAAGTACCACATTGACAAAGTACACTCCGTTATGACAGCTGATAAGACTGATGAAGGAGACTCTAAGCTTGTGGTGAAGAAGGAGAAGTCTATAAAACTAGCGCCTAGTGTATGTGAGACGTGTGGAAAGTCCTTTCCTACTATAGATTCATTAAAATCGCACCTCAGAACACATGCACCCAAAATTCCTTGTCCGGAGTGCCAGAAACTGTATAACCCTTCAAAACTTAAGGTCCATATGAAATTACATCAAGCTGAAAGGGATCCAACATTTAAGGCGACATTACGAAAAAGATCAAAAGTGAAGTGTCCATACTGCAATTATGTTACATATGGCAATGTGCCTTTAGAGGGACATATTAATCGATATCATAATAAAATCAAACCATATACCTGTGCAATTTGCAGTAAAGAGTTTTTAGGACAACTTCACCTTAAAAGGCATATGCAGTGCCATAACGGAGACAGAAGTAGAACTTGTGAGGTTTGTGCGAAGGTTTTGGCGAATAGAGATTGCTTTAGGATGCATATGCGACTCCACACGGGAGAGAAACCGTATCCATGCGAGGTATGCGGTGAGAGGTTCCGTTCATCGAGCATCATGAATGTTCATAAAAATCGCGTGCATGCAGAGAAAAGCTTTAAATGTCCTCTGTGTGGCAGTAAGTTTTACACAGTGAGAGAGCTTAGGAGACACTGTATAAACGTTCATTGGAAACGGAAGGATAAAACGTTCAATTACAAAGAGTTGGATGGCTTGAAGGAGGAGGATTATCATCTCTTCTATGACGGCAGAACGCCGGTGATGAAAATCGAATCGAAGTTATCTTAA
- Protein Sequence
- MSTKRNSPKCNKSKHPGILDRFEIIKQKFKNALLNRVFCGICIKSDEDMISVNVEIELNALHQKIILKDVIDIFFNNSAILTSEYVCDKCVDKLISFYMFVADTKFTADVFNVYLKNLSDKLYSCNLSTVEPLSGSKAALILDNSAIMKYFPEKNHIECKSVEKQDYKSYKCPECSYINNSYKEFLQHKKTHRKSEYACTICEKVFKNDEFLTVHYRVHSVIRCKLCYEVIPEVNLSDHLKKQHNESVLECPFCNVAFYNKRALDTHVKVSHNKDVNQQCPMCLKRFIGNDVDTHRCRFTCPQCKVICCRHFEYLMSYRDQKLKGNKAKCLNCDFVTGKRDSFLGHINRVHLNYLPYSCKQCTLKFNSKMNLNCHIQRAHKEIFSCGYCDQEFKDKKELERHIKHCQLIKRDYSCKKCLASFNTSNELLNHTNYRHNNLCQCQICNKEFTFKSRLKYHIDKVHSVMTADKTDEGDSKLVVKKEKSIKLAPSVCETCGKSFPTIDSLKSHLRTHAPKIPCPECQKLYNPSKLKVHMKLHQAERDPTFKATLRKRSKVKCPYCNYVTYGNVPLEGHINRYHNKIKPYTCAICSKEFLGQLHLKRHMQCHNGDRSRTCEVCAKVLANRDCFRMHMRLHTGEKPYPCEVCGERFRSSSIMNVHKNRVHAEKSFKCPLCGSKFYTVRELRRHCINVHWKRKDKTFNYKELDGLKEEDYHLFYDGRTPVMKIESKLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01335356;
- 90% Identity
- -
- 80% Identity
- -