Emer035751.1
Basic Information
- Insect
- Eudonia mercurella
- Gene Symbol
- -
- Assembly
- GCA_963082485.1
- Location
- OY720049.1:2878553-2883983[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.026 3 9.7 0.8 1 23 65 87 65 87 0.98 2 18 5.1 5.8e+02 2.5 0.1 2 23 113 135 112 135 0.90 3 18 0.0094 1.1 11.1 1.3 2 23 158 180 157 180 0.96 4 18 0.003 0.35 12.6 6.2 3 23 188 209 187 209 0.97 5 18 4.2 4.8e+02 2.7 0.3 2 23 215 237 214 237 0.91 6 18 0.08 9.2 8.1 3.5 1 23 241 264 241 264 0.98 7 18 5e-05 0.0057 18.2 2.2 2 23 271 293 270 293 0.96 8 18 0.015 1.7 10.4 0.3 3 23 301 321 300 321 0.97 9 18 4.8e-05 0.0055 18.3 2.9 2 23 328 350 327 350 0.94 10 18 0.033 3.8 9.4 0.5 1 23 430 452 430 452 0.95 11 18 0.91 1e+02 4.8 0.0 2 23 479 501 478 501 0.94 12 18 0.0031 0.36 12.6 0.9 2 23 524 546 523 546 0.96 13 18 0.02 2.3 10.0 7.2 3 23 554 574 553 574 0.98 14 18 0.0093 1.1 11.1 0.1 3 23 581 602 579 602 0.95 15 18 0.0023 0.26 13.0 1.9 1 23 606 629 606 629 0.97 16 18 2.8e-05 0.0032 19.0 1.0 2 23 636 658 635 658 0.96 17 18 0.0015 0.17 13.6 0.1 3 23 666 687 665 687 0.93 18 18 3.8e-05 0.0043 18.6 2.0 1 23 693 716 693 716 0.98
Sequence Information
- Coding Sequence
- ATGTTTCATACAAAATTGCTATACTTAGGATCACGGGTCTTAGCGAAACATGGATTCGAACTAACAGAAGACTCGAGCAATAAAAGCAAGATCGAAATAACACCAAAAGAGAAAAGGGCAAAAATGAAGCAGAATGTCATAGAAGTATTGTTGAAATCGACTGTAATGCCGTTTAGATGGCTCAAAAGCTCCTTCAGATGTTTCTACTGTTATGACGTATTCCAAGAGCCGAAGGATTTAAAATCACACCAAATCGTTCATACGAGCGAAGACGATAAAAcgaaagcaatgaaaaattactgGGAACCAACAGTGTACGTCGACGTTTCCAATTTGTCGTGCACAATTTGCTCGTTGATCATGAATGACTTCTACAAACTCATCGATCATTTGATACTGATACATAATATGCCTTTCAACAAAGATATAGGGATATGCATGTCCCCATTCAAGCTGAATCAGATATCGGTGCAATGTGTCCAATGCGATAGAGACTATAGAACTTTTGGGCATTTGTTACTCCACACTAATAAAGAGCATAAAGGTTTCTCTCAAGTACTTTGCGAGATTTGTGGTCAACATTTCAGAAGTACACATCATTTGAAAGATCATACAAATAAGGAGCATTCGCACAAAACTGTCGTTTGCACATTGTGCGGTGACGAGTTGACCAGTTTCAACAGAATGAGGACCCACATGCAAAACGTCCACAACAAAAGATACAAATGCTTCATTTGTACGGAATTGTTTGAAACTCATTACAAGAGGTCGTCGCATATGATGACAGTCCACAAGAATAGGGAGCACGTCAAATGTCAGCATTGTCCGAAGACTTTTGTGTTCAGGAGTGCAATGATGCGCCATTTGAGGGAGACTCATTTGCAAGAGAGAAATGCACTTTGTGGCATCTGTGGTTGGAGAGGTTTCAGTGAGAATAGACTACAGAGGCATATGATGAAGCATAGCAACGAAAGGAATGTCAAATGCACTGATTGTGACAAATCATTTAAGACTAAGAAAACTATGAagcaacattttaataatatacaccAGAAAAACGTGGGAATGCAAGATATGTTGCCAGTAATGGCATTCGAAACAATGCAGAGATCAAAAGGCGGCGGTAGCTCACCAGAGGCCGATAAAAAGGATGATGCTACCAATGATGAAGAGTCTCAGAACAAAAAGGACGCAACTCCTGATCACAGAACAGTCATAATGAGACATAATGTTATCCAAGTACTACTGAATTCGACAGTGATGCCATTCAGATGGTTGAAGAGTTCGTACAGATGCTTTTACTGTTACGAACTGTTTGAGGAGCCCAAAGATCTCAAATTGCATCAAGTAGCACATGTAAACGATAATGATATCAGAGTTAAATCTATGGAGAACTACTGGGAATCAACTGTCTACGTAGATGATTCGAACATAACTTGTAAGCTTTGCCCGACGCCTATAAAAGATCTGTACGATATAATAGACCATTTGATTATCAATCATGACATAACTTTTAACAAAGATATAGGCGTTTGTATGAGCCCGTTTAAAATGAACGATCTGACAGTGGAATGTGTCGTATGCAGTAGTTCCTTTAAGACTTTTGGACATTTACTGCTCCATATGAACAAAGAACATGAAGGTTATTATCAAGTGTTGTGCGATGTATGCGGGCAGCATTGCAGAAACAAAAATCATTTGCGAGAACATAAAAGAGAGCATTTGAATAAAAGCATTGCTTGCAACATTTGTGGAGAGGTTTTGAGCAGTTACTATAAGCTGAGGCCTCACATGCAGAATGTTCACGACAAGAAATACAAGTGTACAATATGCTCTGAAGTGTTTGAGACGCATTACAAAAGGTCGATGCATATGATGGTCGAACATAAGAACAAGGAGGAAGTTAAATGCCAGTACTGTGATAAAACGTTTGTTTTTCGTAGCACGATGATGGCACACCTTCGCGAAACACATTTGCAAGAGAAGAATGCGATTTGTAGTATCTGTGGATGGAGGACTGTGGGTAAAAGCAAGTTGTTGCGGCACATGGCAGCTAAGCATAACACTGAGAAGGTGTTTAAGTGTCCGCACTGTGAGAAAGCGTATAAAGCGAAGAAGAATATGTACGCGCACATTAGGAAAGTCCATGGGTAG
- Protein Sequence
- MFHTKLLYLGSRVLAKHGFELTEDSSNKSKIEITPKEKRAKMKQNVIEVLLKSTVMPFRWLKSSFRCFYCYDVFQEPKDLKSHQIVHTSEDDKTKAMKNYWEPTVYVDVSNLSCTICSLIMNDFYKLIDHLILIHNMPFNKDIGICMSPFKLNQISVQCVQCDRDYRTFGHLLLHTNKEHKGFSQVLCEICGQHFRSTHHLKDHTNKEHSHKTVVCTLCGDELTSFNRMRTHMQNVHNKRYKCFICTELFETHYKRSSHMMTVHKNREHVKCQHCPKTFVFRSAMMRHLRETHLQERNALCGICGWRGFSENRLQRHMMKHSNERNVKCTDCDKSFKTKKTMKQHFNNIHQKNVGMQDMLPVMAFETMQRSKGGGSSPEADKKDDATNDEESQNKKDATPDHRTVIMRHNVIQVLLNSTVMPFRWLKSSYRCFYCYELFEEPKDLKLHQVAHVNDNDIRVKSMENYWESTVYVDDSNITCKLCPTPIKDLYDIIDHLIINHDITFNKDIGVCMSPFKMNDLTVECVVCSSSFKTFGHLLLHMNKEHEGYYQVLCDVCGQHCRNKNHLREHKREHLNKSIACNICGEVLSSYYKLRPHMQNVHDKKYKCTICSEVFETHYKRSMHMMVEHKNKEEVKCQYCDKTFVFRSTMMAHLRETHLQEKNAICSICGWRTVGKSKLLRHMAAKHNTEKVFKCPHCEKAYKAKKNMYAHIRKVHG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -