Emer035755.1
Basic Information
- Insect
- Eudonia mercurella
- Gene Symbol
- -
- Assembly
- GCA_963082485.1
- Location
- OY720049.1:2901287-2903688[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 3.4e-05 0.0039 18.8 2.2 1 23 22 45 22 45 0.92 2 16 0.0003 0.034 15.8 2.2 1 23 83 105 83 105 0.95 3 16 0.035 4.1 9.3 0.0 2 23 133 155 132 155 0.91 4 16 0.01 1.2 11.0 0.1 2 23 176 198 175 198 0.95 5 16 8.7e-05 0.01 17.5 0.6 1 23 203 226 203 226 0.96 6 16 0.00032 0.037 15.7 0.9 1 23 231 254 231 254 0.96 7 16 0.00016 0.019 16.6 0.3 2 23 257 279 257 279 0.96 8 16 5.8 6.7e+02 2.3 2.9 2 20 286 304 285 306 0.92 9 16 0.00011 0.012 17.2 1.1 1 23 362 385 362 385 0.95 10 16 0.52 60 5.6 0.0 2 23 458 481 457 481 0.93 11 16 3.4e-05 0.0039 18.7 0.3 3 23 488 509 487 509 0.94 12 16 0.0039 0.44 12.3 5.9 2 23 514 536 513 536 0.94 13 16 0.00072 0.083 14.6 3.4 1 23 541 564 541 564 0.97 14 16 1.9e-05 0.0022 19.5 4.2 1 23 568 591 568 591 0.97 15 16 0.00034 0.039 15.6 0.4 3 23 599 619 597 619 0.96 16 16 1.1e-05 0.0012 20.4 1.8 1 23 625 647 625 647 0.98
Sequence Information
- Coding Sequence
- ATGTCTTCTAGAACCGATCCAAGTTTACGGGCTCATATCACGCTCAGACATAAGCCAATTGGCCACAAGTGTAGTGTTTGCGACAAGGATTTCACAACAAAACGTGCGTTACGTAACCATTTGGGTAATACTCACGATGAAAAAGATCCAGCGCCTTACGAGGGATGTGCCTCTGAGCGCAGAAGGAGAAACTTGAAAATATTATTCAACAACACTACAGTACTGCCATTCAAATGGCGCGGGCGCTTCCTTTGTTTCTACTGCCCCAAAAACTTTTCGGAATATACAGAGTTGAGAAAGCACACCAGTACACATGGATCGTGCTCCACTAAAGACTATTCCTTAAAAATGATTAAAGGAAgccacattgaaattaaagttGATGTCTCCGATGTGTCTTGTAAGGTGTGCAATGAACCGTTTAgagatttaaatgaaattatagACCATCTGATCGGCAAACATAACATGGAGTATGATAAAACTGTCGAAATACCATACCAGAGTTACAGACTTCTCGATATGCGGTGTTTAGTTTGCGAGGAGAAGTTTTCATACTTCGGATATCTGATTAGTCACGTAAACATTGCTCACCCTCAGAACTGTTTCATTTGTGACGATTGTGGAGTCACGTTCAACAAGAAAAGAGATTTGGCAGTCCACTTCAGGTATTACCATAGAAAGGGCGGGTATCCCTGCGATCAGTGTGTGAAGAACTTTGAGAGCTTCTATTTGTTACGAAAACATCAGAATAACGTTCATTTCAGAAAGTGTAAGAATTGTAATTTGCGTTTTGCATCGCTAGCTTTACTGCAAAAACATATACTTGTAGAACACCCTGATGATGGAAGCTTGAAGTGTGAGTTTTGCGCGAAGCAGTGCCATTCTCAACAAGGCTTAATTCAACATAAAAGTAAATGTAGAGTGAAGCTCATAATCTCTGTCGACGAACCGACTGACAAGTTTCTGCCAACGGAAAATAGTTCGGAGCCTAAAACGAAGCAAAATGTGAAACAGATCAGACAGAACATACAGTGCGTCTTGAACATGTCAACAGCTGTGCCTTTCAAGTTCTTCTCCAAGTTCACTTGCTTTTATTGCTCGAAAAAGTTTGTCGATTTTGATGATCTACGAAATCATACTGCAGTAGAACACCCAGTTTGTGATTTGCAATCTAAATCTATGAGGAAATGTAAAGGCGAAAGAGTCAGTGTCAAAATAGATGTCAACTCATTGAGTTGTAAAGTCTGTTGCCAAAACATGGATAGTCTAAACAACCTCGTTGATCATTTGATCACTGATCACAAGATCGATTACGACAAATCGGTTGTAGGTTGCTTGGAGCCATTCAAAATAACTAAGGACAATATCCCCTGCCCCTTATGTCCTGATCGGGTGTTCAGATATTTTGGAATACTTCTGCGCCATATGAACTCTGAGCATAGCAACAACAATCGGATATGCGACTTTTGCGGGCGCAGTTTCAAGAACGTGGCCAATTTACGCGTCCACATATCGTATACGCACACCGGTTCATGCGAATGTAGCATTTGCGGCGTTAAATTTAAGAACCAATGGTGTTTGGCGAGGCATCGTGCGAAATGTCACGACGCAAAAGACTACAAATGTCCAAAGTGTCCAGAGCAATTTCAGTCTCAATACCATAAACAGAAGCACTTGATTAAAATGCACAATATCGGGCACAAATGTGAGCAATGCGGGAAGATGTTTACGAGAAATTCGTTCATGAAGGATCATGTGAGGAGGACGCATTTGAAGGAGAAGAATGTCATATGTTCCGTATGCAATGAGAAGTTCTTTGATAACTACCTTTTGAGGATGCATATGGTGAAGCATGAAGGGGAGAGACGGTTTAGTTGCACAGTTTGTGGTAAAGCGTTTCTCAGGCGAAGCAATCTGCATTCTCATATGGAAATGCACAAGAAATATGGCCATGTTGATAGCTTGTTACATGATATGATTGAATAG
- Protein Sequence
- MSSRTDPSLRAHITLRHKPIGHKCSVCDKDFTTKRALRNHLGNTHDEKDPAPYEGCASERRRRNLKILFNNTTVLPFKWRGRFLCFYCPKNFSEYTELRKHTSTHGSCSTKDYSLKMIKGSHIEIKVDVSDVSCKVCNEPFRDLNEIIDHLIGKHNMEYDKTVEIPYQSYRLLDMRCLVCEEKFSYFGYLISHVNIAHPQNCFICDDCGVTFNKKRDLAVHFRYYHRKGGYPCDQCVKNFESFYLLRKHQNNVHFRKCKNCNLRFASLALLQKHILVEHPDDGSLKCEFCAKQCHSQQGLIQHKSKCRVKLIISVDEPTDKFLPTENSSEPKTKQNVKQIRQNIQCVLNMSTAVPFKFFSKFTCFYCSKKFVDFDDLRNHTAVEHPVCDLQSKSMRKCKGERVSVKIDVNSLSCKVCCQNMDSLNNLVDHLITDHKIDYDKSVVGCLEPFKITKDNIPCPLCPDRVFRYFGILLRHMNSEHSNNNRICDFCGRSFKNVANLRVHISYTHTGSCECSICGVKFKNQWCLARHRAKCHDAKDYKCPKCPEQFQSQYHKQKHLIKMHNIGHKCEQCGKMFTRNSFMKDHVRRTHLKEKNVICSVCNEKFFDNYLLRMHMVKHEGERRFSCTVCGKAFLRRSNLHSHMEMHKKYGHVDSLLHDMIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -