Emer023027.1
Basic Information
- Insect
- Eudonia mercurella
- Gene Symbol
- -
- Assembly
- GCA_963082485.1
- Location
- OY720036.1:2659189-2663058[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0054 0.62 11.8 6.5 1 23 141 163 141 163 0.97 2 13 0.0024 0.27 12.9 1.0 2 21 169 188 168 189 0.92 3 13 0.00076 0.087 14.5 0.5 1 23 195 217 195 217 0.97 4 13 8.1e-05 0.0093 17.6 2.2 1 23 234 256 234 256 0.98 5 13 5.3e-06 0.00061 21.3 2.1 1 23 266 288 266 288 0.98 6 13 1.3e-06 0.00015 23.2 0.9 1 23 294 316 294 316 0.97 7 13 0.00014 0.016 16.8 3.3 2 23 323 344 323 344 0.97 8 13 3e-07 3.4e-05 25.2 1.1 1 23 350 372 350 372 0.95 9 13 0.0017 0.2 13.4 3.8 1 23 378 400 378 400 0.98 10 13 3.1e-06 0.00036 22.0 0.3 1 23 406 428 406 428 0.97 11 13 5.2e-05 0.006 18.2 1.5 1 23 434 456 434 456 0.97 12 13 1.3e-05 0.0015 20.1 1.7 1 23 462 484 462 484 0.98 13 13 0.00032 0.037 15.7 1.5 1 20 490 509 490 512 0.94
Sequence Information
- Coding Sequence
- ATGTTCCATATTATTGCAGCTTGTCGAACTTGTATGAAagataatattgatttattatgCTTGTATCAACCATTGCAATTCGAAGAAAATTTTAACAACATATCATTAGCAGAATTGTTATTGGATTGTTTATCAATACGAGTTTCAAACGACGATGGCTTGCCTCAAAATGTATGTAGAGATTGTGCAAAGGCTTTGCATTTTATATACAGTTTTCGAAAGCAGGCAATTGATGCTGAAGagagatttaaaatattactgcCTACCATACCAGATGTAGGCATAGAAAATAATGAGTCAAAACAAGATGAAATTAAAACTGAAGTTGAATTCAAGACTGAAAAAGATGatcattttgaaaattatgatgACTTCCTGCCAGAGGAAAGTTACCTAAAATCTGAGTCTGAAGAGAAAGTGTATGAATGTCACAAATGCCAGAAACATTttactaaagaaaataaatttcttaaacATCTAGTAGTTCATGAAATGCCATCTTTATCATGTCAATTCTGCAGTAAATTGTTTCGTAAACAGAGCTCTCTAGTTAAACACCAGGCAAAATGCAGTATTAAGTCTCATAGTTGTGAGATATGTCTTGAAACATTTAATACAGAACCTCTCCTTTTGGAGCACATGAAGAACCATTCTAATGCTGAGATCAAGACTGAACTAGAAATTGAAATAGATACAGAATTCAGGTGTTCTGAATGTAATATGGTTTTTAGTAAAAGTAGATCACTGGCTATGCATAAGAAGAAacataataatcaaaaaaacaGTCGGATGATATTTCAATGTGATATTTGTAATAAACagtttaaattaaaagcttttttgaagCGACACATGAATTTGCATTGTTCAAATCAACCATTTGCCTGTGACAAATGCCCAAAAAAATATGCACGTAAAGATCAACTGCAGGACCATTTAAGAAGACATGACGGAATAAAGGCAAATGTTTGTTCTTTTTGCAGCAAAGCGTTCACTCAGCTGTGCAGTCTCAAAGACCACCTGCGGACCCACACCGGTGAAACGCCATACCTATGCTCGAAGTGCGGCAAGGGCTTCAACAACAGCTCCAACCTGCGCCAGCATATGGTGCGTCACACTGGAGTCAAGCCATACTCCTGCTCGCTCTGTCCTAAAACATTTTACACCAAAGGCCAGATGACGTGCCACATAAAGTCGCACACAGGCGTCCACCCGTACAAGTGCGAGCAGTGCGGCGCTGCGTTCACAAAGCCGAGCTCCCTCAAGAAGCACTCGCTCATCCACCTGGGAGTGAAGCCCTTCGCCTGCGATACTTGCACCATGAGGTTCATCAGCCGCGACCACCTGATGCGGCACGCGCGCATCCACACGGGCGAGAAGCCTTACCGCTGCTCGTTCTGCGAGCGCGCCTTCTCGCAGAGCAACGACCTCGTCAAGCACACGCGCCAGCACGTCGGACAGAACATCTATCAGTGCACAGTATGCTTCAAGAGGTTCCGTCTTAAAAGCGAGCTGAAACTACATTATCCAATTCACTACGTCAACGGCGAAGAGCCTCCCGTCATCCCCATAGATAAGGAACACACGGCCCCCGTTCTAATGTTGAAGACCCAAGACACCTCCCTGGGGGACTCTTTAATGAACGAACACGATGGAACGCCGCAACAAAACCCAGAAACAGAGTATCCCAAAGAGAGAGACGATAGAACCATTACCATCACTATCAGTAGGAATGGTCTCGATGAGAATGGTGTGGCAGGCGATATTACTATAAACATTGGTCCAGagaaaagttaa
- Protein Sequence
- MFHIIAACRTCMKDNIDLLCLYQPLQFEENFNNISLAELLLDCLSIRVSNDDGLPQNVCRDCAKALHFIYSFRKQAIDAEERFKILLPTIPDVGIENNESKQDEIKTEVEFKTEKDDHFENYDDFLPEESYLKSESEEKVYECHKCQKHFTKENKFLKHLVVHEMPSLSCQFCSKLFRKQSSLVKHQAKCSIKSHSCEICLETFNTEPLLLEHMKNHSNAEIKTELEIEIDTEFRCSECNMVFSKSRSLAMHKKKHNNQKNSRMIFQCDICNKQFKLKAFLKRHMNLHCSNQPFACDKCPKKYARKDQLQDHLRRHDGIKANVCSFCSKAFTQLCSLKDHLRTHTGETPYLCSKCGKGFNNSSNLRQHMVRHTGVKPYSCSLCPKTFYTKGQMTCHIKSHTGVHPYKCEQCGAAFTKPSSLKKHSLIHLGVKPFACDTCTMRFISRDHLMRHARIHTGEKPYRCSFCERAFSQSNDLVKHTRQHVGQNIYQCTVCFKRFRLKSELKLHYPIHYVNGEEPPVIPIDKEHTAPVLMLKTQDTSLGDSLMNEHDGTPQQNPETEYPKERDDRTITITISRNGLDENGVAGDITINIGPEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01335258;
- 90% Identity
- -
- 80% Identity
- -