Emer036028.1
Basic Information
- Insect
- Eudonia mercurella
- Gene Symbol
- -
- Assembly
- GCA_963082485.1
- Location
- OY720049.1:4378621-4383462[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.091 10 8.0 0.9 1 23 47 70 47 70 0.94 2 28 0.029 3.4 9.5 1.2 1 23 140 162 140 162 0.98 3 28 2.8e-05 0.0032 19.0 0.7 1 23 166 188 166 188 0.98 4 28 3.1 3.6e+02 3.1 0.0 1 23 193 216 193 216 0.92 5 28 0.065 7.5 8.4 0.4 1 21 222 242 222 245 0.85 6 28 0.058 6.7 8.6 0.7 1 23 252 275 252 275 0.93 7 28 0.45 51 5.8 2.5 1 23 327 349 327 349 0.96 8 28 0.0098 1.1 11.0 0.1 3 23 375 396 373 396 0.95 9 28 0.00012 0.014 17.0 0.9 1 23 418 440 418 440 0.98 10 28 0.0022 0.26 13.0 6.3 1 20 444 463 444 466 0.95 11 28 0.0034 0.39 12.5 0.4 1 23 471 494 471 494 0.96 12 28 0.74 85 5.1 2.7 1 23 500 523 500 523 0.95 13 28 0.16 18 7.2 0.1 1 23 578 600 578 600 0.93 14 28 0.00064 0.073 14.7 3.5 1 23 668 690 668 690 0.97 15 28 0.0029 0.33 12.7 0.2 3 23 696 716 695 716 0.95 16 28 0.037 4.3 9.2 0.3 1 23 724 747 724 747 0.94 17 28 0.043 5 9.0 1.8 1 23 753 776 753 776 0.96 18 28 0.2 23 6.9 2.3 1 23 782 805 782 805 0.96 19 28 0.0021 0.24 13.1 0.0 1 21 811 831 811 832 0.94 20 28 0.14 16 7.4 0.3 2 23 935 957 934 957 0.96 21 28 0.3 34 6.4 4.4 1 23 979 1001 979 1001 0.96 22 28 0.00067 0.076 14.7 0.4 1 23 1005 1027 1005 1027 0.98 23 28 0.046 5.2 8.9 0.1 1 23 1032 1055 1032 1055 0.94 24 28 0.00019 0.021 16.4 1.8 1 23 1061 1084 1061 1084 0.98 25 28 0.25 29 6.6 1.2 1 23 1091 1114 1091 1114 0.93 26 28 0.0012 0.13 13.9 3.4 1 23 1120 1142 1120 1142 0.96 27 28 1.6e-06 0.00018 22.9 1.0 1 23 1148 1170 1148 1170 0.99 28 28 1.2e-05 0.0013 20.2 4.1 1 23 1176 1198 1176 1199 0.96
Sequence Information
- Coding Sequence
- ATGCGCAGGCGTCGGCGTGCAAACAACGAGTTGCCAGTGAGATCTGAAAATCGCATCGCAGTAACCATGATGCGCAGAAACGCCATGATAGTTCTCGAATGTTCCACTGCTTGGGCCTTTCGATGGTTTCAGGGGGCTTTCTATTGTTCTTATTGCCAAGTGAAATATACAGACGTAGATCCACTACGGGATCACGTTTTTAAGTACCATTTAAATGAACCACCCACTGACAGAGTATTTGCTAAGCTGACTGAAAATAATATGCTTAAAATAGACGTTGCCAATTTAACTTGTAGAATCTGCCAAAACATAGTCACCGTAGAAGAGTTAAAGCAACATATACCAGCATGTCACGGTAAAGCATTACATGCGGAATACAGCGATGGCGTTTTGCCTTTCAAACTATGTGCTGACGAGTACAGTTGCCAGAAATGTTTTGCTGTGTTTGATACTTTCTCGAAGGCCGACCAGCATATGAACACCCACTATCAGAATTATGTTTGTGACGAATGCGGCAAGACTTTTGTGTCTATCAGCCGTTTCAGGAAGCACGTGCAGAACCATGAGTTTGGACAGTTTCCGTGTGGGGAATGCGACGCCATCTTGAATACGAGAGCTCAGCGATGGGGCCATAGGTTGAAAGTGCACAGAAATGGTGTACGGTATTCGTGCCCCAAATGCTCACAGGCTTTTACGAGCTATGACGTCAGAGCTAAGCATTTAGTTGAGCAACACGGTCAGCGGAAATTAGAATACGACTGTTCAGCATGTGGAAAAATATTTGATACTAGTTCTAAACGTGCGGGTCATTATCGGTTTACACACGggCTACAAGATGTCCAACCGAGGACCAACAATCCCGGAACACCGAATATGTTTAAATGGAAACGGAGACGTAAGCTCACAGAAGATAAAGCTAATGCTGCTATGATACTGCAGTACTCTAACGCTGTGGCATTTAGATGTCAACGCGGCAAGTTTATGTGTGCATATTGTCAAACTAACTGCCAAAATATTCGCGAACTACGTCGTCATTCATCTGTTCACGAAAAGCTGGATGTCGTAGAAAACCCAAACATAAGGTCCTCTTTTCCTCTGAGAATTGATATAACTGACTTGGCATGTACAATTTGTGACAAGAACATAGAAAATTTAGAGCTATTAAAAAATCATCTAAGTAAAATTCACTCTAAGATGATAGATGCAGATTATAGCGACGGTGTGATTCCATTCGTGCTTACTGCGAAAGACTACAGATGCGTGCATTGTGGATTGGTGTTTGAGCGTTCCTTAACGCTTTTTATACACATGAATGAGCATTACCAGAGTTTCGTTTGTCACACATGCGGGAAAGGTTACTCTTCGAAACACAAACTTCGAGCGCACCAGACATGCCATGAGTCTGGACAGTTTGCTTGCCCAAAATGTGATTTGATTTTCGACAACCGCGCGTCTAAAAACAGACATGTGACCACTAGCCATGGACCAAAAAAGAGATATCGGTGTCCAGTTTGTGATGATCATTTCGATTCTTACCACGCAAGGCTGAAGCATTTAGATAAAATGCACGAGCAAAAAGTTGAGTACAGATGTACTTTATGTCCATCTGTATTTGgATCCGACCTCAAAGTTAAATGGAAACCGAGGCGCAAGTATAACGATCACAGAGACAATGCTGCAATTATAATTGAGTGTTCCAGCGCTTGTCCGTTTAGATGGAAGCGTGGGTCGTTCACCTGCGCTTTCTGCCCCCTCTCGTTCGGAGACCTATCAGCCGTCAAGGACCACTCAATCGAACACCCAAATAGGATCGAAGCAATGCGTTTCGCCAGACCATACGATAACATTAAAGTTGACGTCACCGGACTCAGATGCGAGCTTTGCTTAGAAAATATGTTAGACGTCAACGCTCTGAAAGATCACTTACTTGGCGTTCATAAGAAATCGATCAATACCAAAACCGATTTAGGCGTAACACCCTTTCTGACTGAAGGCAAAGACTTCATATGTACCCATTGCGATAAGAGATTCGAACTGTTCTCAAAATTGAATACCCACATTAACCAACACTACCCTAACAATATATGCTTCGAATGTGGCAAAGCTTTCTCAGCGGCGCATAGGCTGAAAGCACATTTGGGTATACACGAAACGGCGAGCAGTACACAGTATAAGTGCACTAAATGCGAAAATGTTTTCCCTACACGTATGCTAAGAAACAGTCATATTGCTTTAGCTCATGGGCCGGAATATAGGTATAGGTGTCCTTTCTGCAAGGACTCTTTCAAACGCTACGCTGATAGAGTTAAGCATCTAAAGGAGACGCATAATAGGAAAGTTGAGTACCCATGTCACTTATGTCCGTCTGTTTTTGCTATGTGCAATCAAAGGACGAAGCATATACAACAAGTTCATATACGACTGAAGCAGTTTTTCTGCGTGCTATGTCCTTACCAATTTGTAACTGCTGCCCAGTTAAAGAACCATATGATTGTAAACGAAGCCAAAGAGAGCGCCGTGCAGTCTGGCTCGGAGATAAATGCAGCTGCATTATTAACATCAGCCCGCGATATGGGCGATAAGAAACGCACCATGTTCAGAAATAACGTTACCACTATAATAGAATCTTGCACCGCTTACCCTTTCAAATACAGGAAGGGGACATATTTATGTTTCTATTGCAAGAACACCTTTCTGGAACCGGAAAAACTTCGGGAGCATAACAAAGCCCATCACTCGGACGTTCAAATAACCGTGAAACCGAGGAAATACGAGCCACTCAAAATGGACTTCACCAAAATATCCTGTAAACTTTGCAGCATTGAAATATCAGACTACACGTCGTTGAAGCTACATTTGAAAAAGGAACACGACAAAGTCATCGATTGCACATACGGCGAATGTGTGTTACCGTACAAATTGAGTAAGGACGAATACTGTTGTCAAATATGCGGAAAACGGTACGAGATGTTCCTCAGTGTCCACAAGCATATGAACGACCATTACGGTCATTACATTTGCGAGAATTGCGGCAAGAATTTCGTCACGCTACAAAGAATGGTGAATCATGCCAGGACGCATGAGCGGGGATGCTTCCCTTGTAGACAATGTAAGGAGACCTTTCCATCGTATGCTGCTATGTACGCTCACGTGGCAAAGATTCATCGCTCCAACAAAAGGTACAAATGTCCAGTGTGCGATGAAAAGTTCGCTTCATACAAACATAGAGTGAAGCATTTGAACACAATTCACGGAGAAAAGACTGCGGTGTTTCCCTGCGCTTTGTGCCCAAAAGTTTTCGACTTATGCAGTCGACGGACAGCTCACATCAAATTCCAACACCTCCAAGAGCGAAATCACGTATGCCACGAGTGCGGAATGAAGTTCTTCTCAAATTATGAGCTTCAAGAACATTCTATAAAGCATAATGGCGAAAGGATTTATCAATGTGATGTTTGCAAGAAGTCTTATGCTAGACTAAAGACACTGAGAGAACATATGAGGATACATAATGATGACCGgagatttgtttgctttgtgtGCGGACAATCCTTCATTCAAAATTGTAGCTTAAAGCAACACATGAGGGTGCATCATCCGACGCATTTAAAGAATGATTTGAGAGTTTAA
- Protein Sequence
- MRRRRRANNELPVRSENRIAVTMMRRNAMIVLECSTAWAFRWFQGAFYCSYCQVKYTDVDPLRDHVFKYHLNEPPTDRVFAKLTENNMLKIDVANLTCRICQNIVTVEELKQHIPACHGKALHAEYSDGVLPFKLCADEYSCQKCFAVFDTFSKADQHMNTHYQNYVCDECGKTFVSISRFRKHVQNHEFGQFPCGECDAILNTRAQRWGHRLKVHRNGVRYSCPKCSQAFTSYDVRAKHLVEQHGQRKLEYDCSACGKIFDTSSKRAGHYRFTHGLQDVQPRTNNPGTPNMFKWKRRRKLTEDKANAAMILQYSNAVAFRCQRGKFMCAYCQTNCQNIRELRRHSSVHEKLDVVENPNIRSSFPLRIDITDLACTICDKNIENLELLKNHLSKIHSKMIDADYSDGVIPFVLTAKDYRCVHCGLVFERSLTLFIHMNEHYQSFVCHTCGKGYSSKHKLRAHQTCHESGQFACPKCDLIFDNRASKNRHVTTSHGPKKRYRCPVCDDHFDSYHARLKHLDKMHEQKVEYRCTLCPSVFGSDLKVKWKPRRKYNDHRDNAAIIIECSSACPFRWKRGSFTCAFCPLSFGDLSAVKDHSIEHPNRIEAMRFARPYDNIKVDVTGLRCELCLENMLDVNALKDHLLGVHKKSINTKTDLGVTPFLTEGKDFICTHCDKRFELFSKLNTHINQHYPNNICFECGKAFSAAHRLKAHLGIHETASSTQYKCTKCENVFPTRMLRNSHIALAHGPEYRYRCPFCKDSFKRYADRVKHLKETHNRKVEYPCHLCPSVFAMCNQRTKHIQQVHIRLKQFFCVLCPYQFVTAAQLKNHMIVNEAKESAVQSGSEINAAALLTSARDMGDKKRTMFRNNVTTIIESCTAYPFKYRKGTYLCFYCKNTFLEPEKLREHNKAHHSDVQITVKPRKYEPLKMDFTKISCKLCSIEISDYTSLKLHLKKEHDKVIDCTYGECVLPYKLSKDEYCCQICGKRYEMFLSVHKHMNDHYGHYICENCGKNFVTLQRMVNHARTHERGCFPCRQCKETFPSYAAMYAHVAKIHRSNKRYKCPVCDEKFASYKHRVKHLNTIHGEKTAVFPCALCPKVFDLCSRRTAHIKFQHLQERNHVCHECGMKFFSNYELQEHSIKHNGERIYQCDVCKKSYARLKTLREHMRIHNDDRRFVCFVCGQSFIQNCSLKQHMRVHHPTHLKNDLRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -