Elac026445.1
Basic Information
- Insect
- Eudonia lacustrata
- Gene Symbol
- -
- Assembly
- GCA_947562085.1
- Location
- OX387325.1:4262914-4280439[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.5 4.5e+02 2.5 4.1 1 23 369 391 369 391 0.97 2 12 5.7e-05 0.0074 17.5 2.4 1 23 398 421 398 421 0.96 3 12 0.17 21 6.6 4.8 1 23 425 447 425 447 0.96 4 12 0.036 4.6 8.7 0.0 1 23 452 475 452 475 0.95 5 12 0.26 34 6.0 1.1 1 23 478 501 478 501 0.93 6 12 0.0034 0.44 11.9 0.2 1 22 574 595 574 599 0.93 7 12 0.0033 0.43 12.0 0.0 3 23 617 638 615 638 0.96 8 12 0.068 8.7 7.9 0.5 2 23 655 677 655 677 0.97 9 12 0.011 1.4 10.4 2.3 3 23 690 710 689 710 0.97 10 12 0.002 0.25 12.7 1.1 1 23 715 737 715 737 0.96 11 12 2.9e-05 0.0038 18.5 2.0 1 23 742 764 742 764 0.96 12 12 5.9e-05 0.0076 17.5 1.5 1 23 770 793 770 793 0.98
Sequence Information
- Coding Sequence
- ATGGTGTATTATTGCTGTGTCAAAGGCTGTACAAACAATAGTAAAAGGTCAAAAAAGGATGCACAGTGTGTATCGTTTCATGTATTGCCATCCAAACCAGCTCTTAGACAGAAATGGCTGCGAGCAATCGGCAGACCACACTGGGAGCCTTCCAGCCATGTGCGGATCTGTAGTGTCCACTTTGATCATGAAAACATCAACCTGGACGGTCACAGGGTTCGCATTACTGATGATGCTTACCCAGTGAAAGCGTTGCCACCCAATGCATATTTTGAAGCTTCCGATCTGGAAGTGTGCCGTTTTTGTTTAGCGACCGAGGTGAAAATGTATAGTCTGCAAGAAGAGGCCTTGAAGATGTGTGTTGACGCTGTAGCCGGATTTGATGATAGATGTAACGTAGATGGTCTACCACAATATACTTGTTATGAATGTAAAGCGAACTTGCAAAAATGCTATAGCCTAATCGAGAAAAGTAGAATAAGCCAGGCCACTTTACTGGATATATTTGCAAAAAACGAACAAATAACAAAACCACTAGTGAGAAAGAGAGACAGAAAAATGTTGAATCTGACATCATCGTTGTCATCACACTATGATACGCCATCACACATATTCGAATACACATACAGTGAACTAGAAAACGTTTCAAAATTATGTAGAAAATACTTTTCTGTAGACAAACCATTTGTGAAAGTAGACGAGGTGCCAACTGTTGACAATGAAATTAAAATTGAACAAACGTCCAATGAAAACTATTTACTCAACGAAAATATAAGCTGTAAAGATAGGACTGAAGCTATAATAGAAAATTACAATTATAATGAAGATGAAGATAATACTGATGGAGACTTCAGTGACAGAAGTTTTCCAATACTTAAAGATCTGAAGAATCCAAAACAAACTTTTATTGATGATATCAATATTAAAGCTAATGTTGATGAGAAAATCATAAAAAATACTTCAAAAAGAAAACGCAATGGTGAACTAACTTCTTTGGAGTTTAAAATGCAAGAATACTACACTATAGTGAAGTTATCATTACAGGAGCAAATAGAAGAATTTGAAAAGACAATTTCAAATCGGAAACCATCTAGTGATACAGTGTTTAAGTGTGAAGTTTGCTGCATGACATTTTCCAGTTTGAATGCGTACGAGTGTCACATCATGTCACATGATCCGAGCCGCGGCCTGTTCGAATGTCCTGTTTGCAAGAAACGATTCAAACACAAAGTGGAGATGACGTCACATGCTCAACGTATGCATGGGAAAAAGTTCATATGCAAGTTTTGCCCCAAGTCCTTCCACCGTGTCAGCGTCGCAAAGACCCACCACCTACGGCACTCCGGCCACCGCTACCAATGCCCCTCGTGCCCGTTCGCGAGCGCGCACGCGTCCGCGCTGGGCGTGCACGCGCGCGGGGTGCACGCGCCGCACGCCTGCGCGCGCTGCGGGCACGCCTTCCTCAGCCAGAAGGGGTTAAAGCTGCACAGAGCGTCGGCGCATCGAGGGGCCGGTGATTCCGTTTCCAGAGGAAGTGGCATCACGTCAGCGGCAGCGTGTCCCCATTCCCTGTTATATTCTTCGATTGGCTCGGGGTTCTCGAGCTTGCGCGCGTCCGCGCTGAGCGTGCACGCTTTTCTTAGCCAGAAGGAGCTTAAGCTGCGTAGAGCTTCCGCGCATCGAGGGGCCGGTGATTCGGACAATGAAACTGACGAGACATACCGCTGCGAAGAGTGCGACATTAACTTCAAGTCGGAGGGCGCCAAGCGCGTCCACATTCTCACGTCCCGATTACACACACACAAAAATAGTATCGCTGTTCTGCCGGACCCGTCATCGGCTATAGCCTGTCGTTGGTGCGGCGTGACGTTTCCCAGTATAAGCGAAATGCGCGCGCACGCTCGTTCTACGCACGCGCGAACACGTCGCGACCGTTCGCGCCAAACGCAGCGCTACCCGAGGCAGTGTGACCATTGCCCCGTATCGCTGAGCAGCGGCTCTCAGCAATGGCAGCACGTGAGACGCGTTCACCGCGGCGCTGGAAACTCCGCGCGCGTCTCTGGTCTTTGCCATACATGCGGGAAGGGATTCCAGAACATAACAAAGCTGCGCATGCACGAGCTACGTCACAGCAGCCCGACGTTCGCGTGCGCGCAATGTTCGCGAATGTTCCACGACAAGTACGCGCTCGCGAAGCATTCGGCGACGCACTACCCGGCGCGGCACTGCTGCCCCGTGTGCCAGCGCGCGTTCAAACTCAAGGGGAACCTCGCGAGGCACGCTAGGGTGCACACCGGCGAAGCCCCATACGAGTGCAGCATCTGCCACAAAAGGCTGAAGTACTCCACCAGCCTCGCCTTGCACATTCGCAGTGTACACCGCCGCCTGCCGCCGCAGCCGCGCAAACCACGCGCAAGGAAGCAACCCGCGACTACTACAGACTAA
- Protein Sequence
- MVYYCCVKGCTNNSKRSKKDAQCVSFHVLPSKPALRQKWLRAIGRPHWEPSSHVRICSVHFDHENINLDGHRVRITDDAYPVKALPPNAYFEASDLEVCRFCLATEVKMYSLQEEALKMCVDAVAGFDDRCNVDGLPQYTCYECKANLQKCYSLIEKSRISQATLLDIFAKNEQITKPLVRKRDRKMLNLTSSLSSHYDTPSHIFEYTYSELENVSKLCRKYFSVDKPFVKVDEVPTVDNEIKIEQTSNENYLLNENISCKDRTEAIIENYNYNEDEDNTDGDFSDRSFPILKDLKNPKQTFIDDINIKANVDEKIIKNTSKRKRNGELTSLEFKMQEYYTIVKLSLQEQIEEFEKTISNRKPSSDTVFKCEVCCMTFSSLNAYECHIMSHDPSRGLFECPVCKKRFKHKVEMTSHAQRMHGKKFICKFCPKSFHRVSVAKTHHLRHSGHRYQCPSCPFASAHASALGVHARGVHAPHACARCGHAFLSQKGLKLHRASAHRGAGDSVSRGSGITSAAACPHSLLYSSIGSGFSSLRASALSVHAFLSQKELKLRRASAHRGAGDSDNETDETYRCEECDINFKSEGAKRVHILTSRLHTHKNSIAVLPDPSSAIACRWCGVTFPSISEMRAHARSTHARTRRDRSRQTQRYPRQCDHCPVSLSSGSQQWQHVRRVHRGAGNSARVSGLCHTCGKGFQNITKLRMHELRHSSPTFACAQCSRMFHDKYALAKHSATHYPARHCCPVCQRAFKLKGNLARHARVHTGEAPYECSICHKRLKYSTSLALHIRSVHRRLPPQPRKPRARKQPATTTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00681715;
- 90% Identity
- iTF_00682493;
- 80% Identity
- iTF_00681715;