Elac031891.1
Basic Information
- Insect
- Eudonia lacustrata
- Gene Symbol
- -
- Assembly
- GCA_947562085.1
- Location
- OX387332.1:5246657-5252651[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.2e-06 0.00028 22.0 0.7 1 23 297 319 297 319 0.98 2 11 0.00017 0.021 16.1 3.7 1 23 410 433 410 433 0.97 3 11 7.4e-05 0.0096 17.2 2.1 1 23 437 459 437 459 0.98 4 11 0.0028 0.36 12.2 0.2 2 23 481 503 480 503 0.93 5 11 0.0038 0.49 11.8 0.4 1 23 507 530 507 530 0.97 6 11 0.013 1.7 10.1 0.2 2 23 553 575 552 575 0.93 7 11 7.1e-06 0.00092 20.4 2.8 1 23 585 607 585 608 0.96 8 11 0.00089 0.11 13.8 1.7 2 23 623 644 622 644 0.96 9 11 0.0072 0.92 10.9 0.4 1 23 650 672 650 672 0.94 10 11 0.47 61 5.2 2.0 1 22 678 699 678 702 0.90 11 11 0.02 2.6 9.5 0.0 2 23 749 770 748 770 0.97
Sequence Information
- Coding Sequence
- ATGGAAGGAACGGAGTTTAATAACCCATCACAAACATCAAAAGATTTACATAAGCAAGAAACCGAAATTGCACTAACTGAGAACAAGTTTCCAGATGTCATGGTGCAAATTAAGAATGAAAATATCACAGAAGAAATGCATTTAAGTGAAGGCACTAATGAGCTAGGTCAAGTTTTGGATGTTAAAGAAGAAATGCAGATCGATTTTGATCGAGATATAACGTCAGATCATACAGAAGAACTTGTTTCTAATTTAACATTAGAAATGTCAGAGATAGAAAGTAATGCAAATAATGAAAATTTCAATATAATACCTAAGGAAGAGTCTGATCACCTCACTACGAACGCTGAAGTAAAAGATGAAATGTCCATGGGTGATGAAGCATTAATATCATATGATTATCCTAATTTTGATGACACTGGGAGTGTTGATAGCAATGATATTGCAGTTTTAGGCAATGTGGAAATATGTCTACATGAAGATTACAGTATCAAGTCAGAAACACAAACAGATTTTGAGAATCACCAACACAGACAAGAATATAGCAAACATGGCATCAAAGAAGAGGCAGAAATAGTAACAGAAACTCATCTGATTTCAAACAAACTTATCAACACCACATCAACCATTACCAACCCACATGATGGTGCAATTGAATCTCAAACCACAAAGACCTTGGTTATGGAGATCTTACCCATCCCACATAGCTCAATGCCTCTATCAAAAATTGGCAACCCTGAAGAGATACTTCCTACATCTTACAATCACGAAATGGAGTATGAAGATATGTTCCAATTGAATTCAATAACTGGCAATGTACTATCATTGGAGCAAGAAGCGTACGGATTGCTTAAAGCAAAGAAAAACATAGTGCAGACATCTAAAAGTTATCAATGTCCCAAGTGTTCTAAAGAGTGCAAAAATGCAGCTGCCCTGAGGAAGCATATGGCTGTTCACAAAACTATTGAACGACGAGTGATGGGTGTCATAAAAGGCCAGAAGACGAGAAAGGAGAATCTCAAGAAACGTTATGAGAAGGAGAAAGTCGCTGCATGCGAATCAAAAGTCCAGAGTGTTAAGACAGAAAAGTTTGAAGAAGATATCAAACCAATTATAAAGAAGGAGGGGTATGAATGCACGTGCGGCCAAGTTTTCCAACGGCGAAGCAGAATGGAGACGTGTTTGCGGACGCACGAGTTTTATTCAGATACGAAATCCAAGCCCTGGCACCAGTGCGTCACATGCTTGAAACAGTTCAAAGACAAAAGCGAACTCTTCGCCCATCGGAGGAGGTCACATCGAAAGAAATTTCAGTGCAAATTTTGCCCAACCGATTACAGTACGCGTAAAGAGCTATTCAAACATCTACAAATACATCAGAAGGTGCAACTAATGGAGTACAAGGTGATATCGGAAGTGGTGCAAGGAAAACAGAAGCTGCAATGTTTCATGTGCGCCAAGAGTTATTCTGAACTGTCGGAATTGAAGTCGCACGTCATGGAGGACCACAAAAGCCCTTACATATGCCCCAATTGCAAGAAAATGTTCCCAAAAATCATAGAGTTCGGTAACCATGTGAAAACTTATCACCCAGAAGTGGGTGGGCAGTCAGTTTTAGATGTCCTCGAAGCTTTCTCGATGCTAGTGAAAGCTTGGAAGTGCGAAGAGTGTGGTTTACAGTTTCACGAGGCGGATAAACTGGCGTTACATCAAATTGAGCAACACAGTCCTGCCTTCAAGGTGGATCCTCAATTCCAGTGCACAGATTGCCGTAGAGTATTCATAAGTCAGAAAGGTTTGACTTCGCATAGACGGGTCCACCATAGTGACAATGTTGAAGTGACTGAGCCAGCAGAGAAAGGTATAATGTGCTTGGAATGCCGGAAGATATGTAAGGATATGGACTCTTTGACATCACACATGAGATTGCATTCCCCTGACAGGAAATATCCTTGTAAGTTCTGCGACTTTCGATTTGCCACGCCAGAGAAGAGGAAAGCGCACGCGGAGTTGCATACGGGCGATATGAAATACGTTTGTTTTATATGCGAGTACCAGTGTAGTTCGGAGAACCGTTTGGCGCAACACAAAATGTCTTTGAAACATATAAATATGAAAGAGTTTTTGCTTACTGGCAGGCCATTGATTGAAGAGGAACAGTCTACATCAAAACCCAAAGCTAAAAAGAAAAAAGAGGAGAGAAAGAAAAAAGAGGATATGGATAGTGGCGGTGGGGAAAATGTACCTTGTGACATTTGTGGAGACAGTTTTGCGAGTGAAGAGTTAATGCTGGAACACAAACAGACTCACCCGTTTATTGAGTTTCCGAATGATGATAAACCCAGTAGAATATTTTTTAAGTGA
- Protein Sequence
- MEGTEFNNPSQTSKDLHKQETEIALTENKFPDVMVQIKNENITEEMHLSEGTNELGQVLDVKEEMQIDFDRDITSDHTEELVSNLTLEMSEIESNANNENFNIIPKEESDHLTTNAEVKDEMSMGDEALISYDYPNFDDTGSVDSNDIAVLGNVEICLHEDYSIKSETQTDFENHQHRQEYSKHGIKEEAEIVTETHLISNKLINTTSTITNPHDGAIESQTTKTLVMEILPIPHSSMPLSKIGNPEEILPTSYNHEMEYEDMFQLNSITGNVLSLEQEAYGLLKAKKNIVQTSKSYQCPKCSKECKNAAALRKHMAVHKTIERRVMGVIKGQKTRKENLKKRYEKEKVAACESKVQSVKTEKFEEDIKPIIKKEGYECTCGQVFQRRSRMETCLRTHEFYSDTKSKPWHQCVTCLKQFKDKSELFAHRRRSHRKKFQCKFCPTDYSTRKELFKHLQIHQKVQLMEYKVISEVVQGKQKLQCFMCAKSYSELSELKSHVMEDHKSPYICPNCKKMFPKIIEFGNHVKTYHPEVGGQSVLDVLEAFSMLVKAWKCEECGLQFHEADKLALHQIEQHSPAFKVDPQFQCTDCRRVFISQKGLTSHRRVHHSDNVEVTEPAEKGIMCLECRKICKDMDSLTSHMRLHSPDRKYPCKFCDFRFATPEKRKAHAELHTGDMKYVCFICEYQCSSENRLAQHKMSLKHINMKEFLLTGRPLIEEEQSTSKPKAKKKKEERKKKEDMDSGGGENVPCDICGDSFASEELMLEHKQTHPFIEFPNDDKPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00683606;
- 90% Identity
- iTF_00683606;
- 80% Identity
- -