Elac004198.2
Basic Information
- Insect
- Eudonia lacustrata
- Gene Symbol
- -
- Assembly
- GCA_947562085.1
- Location
- OX387333.1:15054097-15071407[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00029 0.037 15.3 3.6 1 23 39 61 39 61 0.97 2 16 1.1e-05 0.0014 19.8 2.3 2 23 66 87 65 87 0.96 3 16 0.068 8.8 7.9 0.6 1 23 93 115 93 115 0.93 4 16 0.0055 0.71 11.3 3.0 2 21 122 141 121 146 0.93 5 16 0.0021 0.27 12.6 1.1 1 23 154 177 154 177 0.92 6 16 0.07 9 7.8 0.1 3 23 185 208 183 208 0.93 7 16 0.15 20 6.7 0.1 1 17 217 233 217 234 0.90 8 16 0.16 21 6.7 0.1 1 17 239 255 239 256 0.90 9 16 0.16 21 6.7 0.1 1 17 321 337 321 338 0.90 10 16 0.16 21 6.7 0.1 1 17 403 419 403 420 0.90 11 16 0.16 21 6.7 0.1 1 17 485 501 485 502 0.90 12 16 0.16 21 6.7 0.1 1 17 567 583 567 584 0.90 13 16 0.16 21 6.7 0.1 1 17 649 665 649 666 0.90 14 16 0.16 21 6.7 0.1 1 17 731 747 731 748 0.90 15 16 6.6e-05 0.0086 17.3 2.6 1 23 813 835 813 835 0.97 16 16 0.017 2.2 9.8 0.0 1 23 841 864 841 864 0.95
Sequence Information
- Coding Sequence
- ATGGCGCTGCTGCCTGTAATATTATGGCGCTGCTGCCTGTGCGGCGAGCTGGGGTCGCGCGCGGCCGTGGTGGCCGACCACTGCGCGCGCGTGCACGGCAGCGACGCGCCCACGCACGTCTGCAGCGTCTGCGGACACACCTCCGATACCCTGAGCAAGCTACGCAACCACATGAAGTCTCACGCGGAACGCCAGCGCTGCGACCAGTGCAGCAAGACCTTCAGCGACAAATCCACGCTCAAAACGCACCTCTTCATCCATAAGGGCGAGAAGGAGCACGCATGCCCGTCGTGCGGCAAGATGTTCCTGTTCAAGAAGGCGATGCAACTGCACGCCGCCACCCACGCCGCGCCCGCGCTGCTCTACTGCCACCAGTGCGACATGAACTTCAAGAACCAGATGTCTTACTATCAGCATATGAAATACAATCTTAAGCATGTGGACCCTGCCCGGCTCAAGTATGAGTGCTCGCTGTGTCCCAAGCGGTTCATGAAGGCGTCCCGCTTACGGGAACATCACACGGCCGTGCACCTGCGGCAGACGCCTGTGCCCTGCCCCGAGCCCGGCTGCGGCTTCTCGTGCGCGTCGCGTCCGGTGCTGCGCGCGCACTCGCGGTCGGTGCACCGCCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCGTACGTACTACATTACAGGTCGGTGCACCGGCAGACGCCCGCGCGCAACCACGTCTGCCACGCCTGCGGGAAGGCGTACACCAACAAGAAGACGTTGGAAGGCCACCTCCGCTCGCACTCCGGCGAGCGTCCGTTCGCGTGCGCGCGCTGCGGCGCCACGTTCGGGTACGAGGCCGCGCTCTACAACCACACGCGGCTCGTGCACCTCAAGGACAAGCCCACACGGAAGTCCCAAGCTTGCCGCGAGTGGCCGTCTGTCCCCGCGCCTGTCACTACGGAAGAACAAGATATTCCCATCTGTCCCACTGCTCTGCCATCCTCTTCTGAGCAGACGTCGTGA
- Protein Sequence
- MALLPVILWRCCLCGELGSRAAVVADHCARVHGSDAPTHVCSVCGHTSDTLSKLRNHMKSHAERQRCDQCSKTFSDKSTLKTHLFIHKGEKEHACPSCGKMFLFKKAMQLHAATHAAPALLYCHQCDMNFKNQMSYYQHMKYNLKHVDPARLKYECSLCPKRFMKASRLREHHTAVHLRQTPVPCPEPGCGFSCASRPVLRAHSRSVHRRQTPARNHVCHACGKAYTVRTTLQTPARNHVCHACGKAYTVRTTLQVGAPADARAQPRLPRLREGVHRTYYITGRCTGRRPRATTSATPAGRRTPYVLHYRSVHRQTPARNHVCHACGKAYTVRTTLQVGAPADARAQPRLPRLREGVHRTYYITGRCTGRRPRATTSATPAGRRTPYVLHYRSVHRQTPARNHVCHACGKAYTVRTTLQVGAPADARAQPRLPRLREGVHRTYYITGRCTGRRPRATTSATPAGRRTPYVLHYRSVHRQTPARNHVCHACGKAYTVRTTLQVGAPADARAQPRLPRLREGVHRTYYITGRCTGRRPRATTSATPAGRRTPYVLHYRSVHRQTPARNHVCHACGKAYTVRTTLQVGAPADARAQPRLPRLREGVHRTYYITGRCTGRRPRATTSATPAGRRTPYVLHYRSVHRQTPARNHVCHACGKAYTVRTTLQVGAPADARAQPRLPRLREGVHRTYYITGRCTGRRPRATTSATPAGRRTPYVLHYRSVHRQTPARNHVCHACGKAYTVRTTLQVGAPADARAQPRLPRLREGVHRTYYITGRCTGRRPRATTSATPAGRRTPYVLHYRSVHRQTPARNHVCHACGKAYTNKKTLEGHLRSHSGERPFACARCGATFGYEAALYNHTRLVHLKDKPTRKSQACREWPSVPAPVTTEEQDIPICPTALPSSSEQTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -