Elac015775.1
Basic Information
- Insect
- Eudonia lacustrata
- Gene Symbol
- -
- Assembly
- GCA_947562085.1
- Location
- OX387335.1:5475774-5484593[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.15 19 6.8 1.7 3 23 2 22 1 22 0.96 2 20 1.8e-05 0.0023 19.1 1.9 1 23 69 92 69 92 0.98 3 20 0.072 9.3 7.8 0.2 2 23 116 138 115 138 0.93 4 20 0.08 10 7.6 1.3 2 19 161 178 160 183 0.88 5 20 0.0055 0.7 11.3 0.2 1 23 189 212 189 212 0.92 6 20 0.00022 0.029 15.7 0.7 2 23 216 238 215 238 0.95 7 20 0.12 16 7.0 0.2 2 23 244 266 243 266 0.92 8 20 8.7e-05 0.011 17.0 0.2 2 23 274 296 273 296 0.94 9 20 0.053 6.9 8.2 0.1 3 23 304 324 302 324 0.92 10 20 6.9e-07 9e-05 23.6 3.6 1 23 330 352 330 352 0.98 11 20 6e-09 7.8e-07 30.0 0.4 1 23 358 381 358 381 0.98 12 20 2.9 3.7e+02 2.7 0.1 2 21 489 508 488 511 0.86 13 20 0.0037 0.48 11.8 0.8 2 23 534 556 533 556 0.94 14 20 0.0012 0.15 13.4 0.0 1 23 562 585 562 585 0.94 15 20 1.2e-05 0.0015 19.7 0.4 2 23 589 611 588 611 0.94 16 20 0.086 11 7.5 0.1 2 23 617 639 616 639 0.94 17 20 0.00064 0.082 14.2 1.0 1 23 646 669 646 669 0.95 18 20 0.00034 0.043 15.1 0.3 3 23 677 697 675 697 0.93 19 20 0.0047 0.61 11.5 3.7 1 23 703 725 703 725 0.97 20 20 1.2e-05 0.0015 19.7 1.1 1 23 731 753 731 754 0.96
Sequence Information
- Coding Sequence
- ATGTGCTTCTATTGTGAAGACCACTTTGTTGAGAGCTCTAAACTCAGAGAGCACTTAGAAAAACACCCAGATGTAGAACTAAATGAGAAAGCGGTCGTGGCTTCGCTCAAGGACAAAAAAACAAAAGAAGAAATGGCGAAGATAGTCAAAGTGATCACAGAGCACTCGACAATAATGCCCTTCAGATGGTCCACAAGGCACTATTTCACATGCTTCTTTTGCGGCACTTCATTCGAGAACATAACAAATCTGAAGCGTCACACACAAACAGTCCACGAAACGGACAAGAAAGTAACGCAGAAGTATTACTATTTGAGCCGAATAAAGTTGGACGTCTCCGAAATATCGTGCAAAAGTTGCCCCAAAACAATTGACGATTTAGAAAGCTTTTTCAACCACATCTCTTACGCGCACGAAGTCAAGTTTAACAGAGACTTGGTCAATCATTTTGTCTGCTTCAAATTGACAGATGATGATCTCACCTGCCTGCATTGCGGCGAGCGGTTCTCCTTCTTCGGCACTTTGCTGATGCACGACAATAGGTACCATAACGAGTCCAAAACCTTTGCGTGCAACGTCTGCGGGGAAGCTTTCATATCCAAATATATACTATCCAGTCACATTTATTACAAGCACGATGAGAAACGTTGTAAAATCTGCAACGAAGTGTTCAAAACAGCGTTTGCGTTAATGTCTCACAACCAAAGGGTACATGATGTTGATAAACTCAAATGTCCTGAATGTAACGAGATTTTAGGCAGCAAATATTTACAGAAACAGCACAGATTACTAGTTCACGGTGTTGGAGGGAAGCCTTTGGTATGCGAAATTTGCTCCCGATCTTTTGTGACCAACAAGACTTTGAGAGACCATGTGGCGAGGGTTCATAAGAAGGAGAAGAGTATTGCGTGCGAGATTTGCGGATTCAAAGTGTTCAGTAGAGCAGTTTTAACTTTGCATATGGTGAAACATAGTGAAGCGAGACCGTTCGTTTGTGAGAAATGTAAAAAGAGTTTTCGTAGAAAGAAAACTCTGGAGACCCATATGAAGTTGCATAACAATTTTCGGCCTTACGAATGCAGTGATTGCGATAAGTCTTTCGTGCAGAGCGGCAACTTGAGGAAGCATATTAGAATTAGTCACTCGGATAGTAAAGTTGATAAGGGGCAGCGTATTAAAAAGAGCGAATTAGGGGAAATTAGCAAACCAGAGATCTTCGTGCTCAACTCTGAGAGACTACTCAAGACAGATTTAACGCAAATTCTCACAGTAATTCTGCAGAACTCCACTATAATGCCATTCCGATGGTGTTCCAATAAGTACATGTGTTTCTACTGCTGTTGTCCATTCGACGACTGCTGCAAACTAAAACAGCATACCAAGAGCGAACATGAAGAAGCGAAGTTGAAAAACGTGCTCAGTGTAGTCAGGAGTAGCAGAATTAAGTTGGATGTCTCTGAAATTTCATGTAAGCGTTGCCCGAAATTGATACGAAATTTGGATGACTTCTTATTGCACGCAGCGGCAGTACATGAGTGCAAATTCAACATGGATCTCAGTAAAGACCTGTTTAGCTTTAAATTGTCTGACGGCGATATGAGCTGTTTGGAATGTGGGCAGGTCTTCAGATTCTTCGGCTCTTTGCTGGCCCACGTACATAAGTATCATAACAAGTCGAGCACGTTTCTTTGCGAGATATGCGGCCAAGGGTTTGTAGCTAAAGCGAACGTAACGAGTCATATAAAAAATGTGCATGACAGAAGTGAGTGCGAAATTTGCAACAAAACTTTTCCGACGCAATACTCTTTGACGGTGCACTTCGAAAAAGAACATAGAGTTGGTAAGCTGCAGTGCCCTAAATGTCCAGAGATTTTAGGCAGTAGATACCTGAAGAAACGACATTTGGCTATCGTCCATGACGTTCAGAATAGCCAGTTTAAATGTGATGTGTGCTCTAAGATCTTTACGATGAGATACAAATTGTTGGAGCACAAAGCTCGTATACATTTGAAGGAGAAATCTTTGGCTTGCGAGATTTGTGGCTTCAAAGTTTTTAATAAAGAATTGCTGAAAAGGCATATGGTGAGACATGATGATTCTAGGCCTTTCCAATGTGATTTATGCAAGAAGTCGTTTCAGAGAAAGAAGACTCTGGACTTCCATAGGAGGATACATACCAACGATAGGAGGTATGAATGTAAAGAATGTGGGAAGGCCTTCGTTCAGGTGACTAGTTTGAAATTGCATTCGAAAGTACACCATTCTAGTAATGAGGGCGCTACCTGGAATTGA
- Protein Sequence
- MCFYCEDHFVESSKLREHLEKHPDVELNEKAVVASLKDKKTKEEMAKIVKVITEHSTIMPFRWSTRHYFTCFFCGTSFENITNLKRHTQTVHETDKKVTQKYYYLSRIKLDVSEISCKSCPKTIDDLESFFNHISYAHEVKFNRDLVNHFVCFKLTDDDLTCLHCGERFSFFGTLLMHDNRYHNESKTFACNVCGEAFISKYILSSHIYYKHDEKRCKICNEVFKTAFALMSHNQRVHDVDKLKCPECNEILGSKYLQKQHRLLVHGVGGKPLVCEICSRSFVTNKTLRDHVARVHKKEKSIACEICGFKVFSRAVLTLHMVKHSEARPFVCEKCKKSFRRKKTLETHMKLHNNFRPYECSDCDKSFVQSGNLRKHIRISHSDSKVDKGQRIKKSELGEISKPEIFVLNSERLLKTDLTQILTVILQNSTIMPFRWCSNKYMCFYCCCPFDDCCKLKQHTKSEHEEAKLKNVLSVVRSSRIKLDVSEISCKRCPKLIRNLDDFLLHAAAVHECKFNMDLSKDLFSFKLSDGDMSCLECGQVFRFFGSLLAHVHKYHNKSSTFLCEICGQGFVAKANVTSHIKNVHDRSECEICNKTFPTQYSLTVHFEKEHRVGKLQCPKCPEILGSRYLKKRHLAIVHDVQNSQFKCDVCSKIFTMRYKLLEHKARIHLKEKSLACEICGFKVFNKELLKRHMVRHDDSRPFQCDLCKKSFQRKKTLDFHRRIHTNDRRYECKECGKAFVQVTSLKLHSKVHHSSNEGATWN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -