Elac032578.1
Basic Information
- Insect
- Eudonia lacustrata
- Gene Symbol
- -
- Assembly
- GCA_947562085.1
- Location
- OX387315.1:3685127-3713500[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.9 3.8e+02 2.7 1.2 5 23 105 124 102 124 0.92 2 17 5.4e-05 0.0069 17.6 1.2 1 23 228 250 228 250 0.98 3 17 9.1e-06 0.0012 20.0 0.9 1 23 256 278 256 278 0.97 4 17 0.00034 0.044 15.1 0.5 1 23 284 306 284 306 0.97 5 17 6.6e-06 0.00086 20.5 0.9 1 23 312 334 312 334 0.98 6 17 3.9e-05 0.0051 18.0 1.3 1 23 340 362 340 362 0.98 7 17 0.00082 0.11 13.9 0.5 1 23 368 390 368 390 0.98 8 17 0.00067 0.087 14.2 0.0 1 23 396 418 396 418 0.96 9 17 0.00053 0.069 14.5 0.1 1 23 465 487 465 487 0.97 10 17 2.9 3.8e+02 2.7 1.2 5 23 495 514 492 514 0.92 11 17 0.0034 0.44 12.0 0.8 1 23 618 640 618 640 0.98 12 17 3.6e-06 0.00047 21.3 1.2 1 23 646 668 646 668 0.97 13 17 1e-05 0.0013 19.9 1.2 1 23 674 696 674 696 0.97 14 17 1.1e-05 0.0015 19.7 0.4 1 23 702 724 702 724 0.98 15 17 3.9e-05 0.0051 18.0 1.3 1 23 730 752 730 752 0.98 16 17 0.00082 0.11 13.9 0.5 1 23 758 780 758 780 0.98 17 17 0.0012 0.16 13.4 0.1 1 23 786 808 786 808 0.95
Sequence Information
- Coding Sequence
- ATGGAGTCAATGCAGCACTTACTGTGCGACTCACTAAAAAATAAACGCTCGTTCGCGTACGCCCCGCTCACCCGACCACGCGTAGGTAGCAACAAGCTCGAGCTTCACGGCGCGCCCGCAGCTTTGTCGGCGCGGCGAGCGCCGGCGGCCGGCGGGTGGCGGGCGCACGCCGCACGCATCAAAGCCAGTGTGCCGCGCAACCCCGAACGAGTGACACATTTCTTTGCCCTAGCGAATTTGGAGCGAAACGTGTTCTTAGAGAGCACGCTGAAGGCTCACGCAGCCGTCCACGAGCCCTTCCCGCACGTGTGCCACTGCGGCGTCGGCTTCTACGAGAAGCAGGACCTCAACGGCCACAAGCAGCTAGTTCACAAAGCAGAACTTGAAAACCAACTCGAGAAGCTAACATTTAGAAAACAGCGAGCGTTAAAGAATGAACTATGGGTGCCAGTCATCAATTATACCGGGCCCAAAGAGAAAAAAGAATACTCAGAAGAATTACCAAAAGAATTTTCAGATGAATCTTCAGACGAATTCTCAAAAAAACTCAAGAAACCTATAAGACCGAGACTGAAAGCGGAGTTAGTCGTGAAATCTGAAACAAAATCAAGAACAAAGGCAGGAACCAAATCGAAGAAAATCAATAGGGGCAATACAAAGGCACCGACGGGATTGAATAAGTTCACTTGTGACCTATGCAGTAAAACGTTATCTTCGAAACGAACTCTAAATGCACACTTGCAATCACATGCAGGGTTGAAAGAATTCGCTTGCAACTTGTGTGATAAAAGGTTCAATCAACTGGCGTCTTTAAAGATGCATCTGCAACGGCACACGGGTCTAAAAAAGTTTGCTTGTGATTTATGCGGTAAAAGGTTCTTTGCAAAACGGAATCTAGGATTACACTATAGAATCCATGCGGGGTTGAAAGAATTCGTTTGTGACTTGTGCGATAAAAGGTTTACTCAATTGGTTACTCTGAAGTTGCATCTGCAACGGCACGCGGGTTTAAAAGAGTTTAGTTGTCAGTTTTGTACAAAAAAGTTCATAAACAAACAAGCTTTGGTGATTCACGTGCGGACGCACACCGGGGAGAAGCCGTTCGTGTGTTCGTTCTGCGCGCGCGCGTTCGGCGACCAGTCGGCGCGCACGCGTCACGAGCGCACGCACACGGGCGTGAAGCCGTACGCCTGCAGCTACTGCGGCATGGCCTTCAGCGACGCCAGCGGCCGCATCGTGCACGAGCTCCGGCACACCGGGAAAAAACAATACAAATGTAAAATCTTCGCTACGACCCGTGGTTTCAGAGATACAAGGTGGCCGTGCCAAAATGAGGCTCATTTTGGCACGGCCACCTTAAATGGCGGCAGTGGTGACCGGTTTACAAAAGTTTTCAAATGTGAGGAATGCAGCCAAAAATTTGTGTTAGAGAGCACGCTGAAGGCTCACGCAGCCGTCCACGAGCCCTTCCCGCACGTGTGCCACTGCGGCGTCGGCTTCTACGAGAAGCAGGACCTCAACGGCCACAAGCAGCTAGTTCACAAAGCAGAACTTGAAAACCAACTCGAGAAGCTAACATTTAGAAAACAGCGAGCGTTAAAGAATGAACTATGGGTGCCAGTCATCAATTATACCGGGCCCAAAGAGAAAAAAGAATACTCAGAAGAATTACCAAAAGAATTTTCAGATGAATCCTCAGACGAATTCTCAAAAAAACTCAAGAAACCTATAAGACCGAGACTGAAAGCGGAGTTAGTCGTGAAATCTGAAACAAAATCAAGAACAAAGGCAGGAACCAAATCGAAGAAAATCAATAGGGGCAATACAAAGGCACCGACGGGATTGAATAAGTTCACTTGTGACCTATGCAGTAAAACGTTATCTTCAAAACGAATTCTAAATGCACACTTGCAATCACATGCAGGGTTGAAAGAATTCGCTTGCAACTTGTGTGATAAAAGGTTCAATCAACAGGCGTCTTTAAAGACGCATCTGCAACAGCACACGGGTCTAAAAAAATTCGCTTGTGATTTATGCGGTAAAAGGTTCTTTAAAAAACAGAATCTAGAATTACACTATAGAATCCATGCGGGGTTGAAAGAATTCGTTTGTGACTTGTGCGATAAAGGGTTCACTCAATTGGTTACTCTGAAGTTGCATCTGCAACGGCACGCGGGTTTAAAAGAGTTTAGTTGTCAGTTTTGTACAAAAAAGTTCATAAATAAACAAGCTTTGGTGATTCACGTGCGGACGCACACCGGGGAGAAGCCGTTCGTGTGTTCGTTCTGCGCGCGCGCGTTCGGCGACCAGTCGGCGCGCACGCGTCACGAGCGCACGCACACGGGCGTGAAGCCGTACGCCTGCAGCTACTGCGGCATGGCCTTCAGCGACGCCAGCGGCCGATTCATGCACGAGCTCCGGCACACCGGGAAAAAACAATACAAATGTAAAACCAGCAGCGCCCTACCACGAGCCGGCATGGTAGCGGCTTTCGATACGTCCGTCACGCCACTCGCTCTGCTCTGCTCCCCGACCGCCTAA
- Protein Sequence
- MESMQHLLCDSLKNKRSFAYAPLTRPRVGSNKLELHGAPAALSARRAPAAGGWRAHAARIKASVPRNPERVTHFFALANLERNVFLESTLKAHAAVHEPFPHVCHCGVGFYEKQDLNGHKQLVHKAELENQLEKLTFRKQRALKNELWVPVINYTGPKEKKEYSEELPKEFSDESSDEFSKKLKKPIRPRLKAELVVKSETKSRTKAGTKSKKINRGNTKAPTGLNKFTCDLCSKTLSSKRTLNAHLQSHAGLKEFACNLCDKRFNQLASLKMHLQRHTGLKKFACDLCGKRFFAKRNLGLHYRIHAGLKEFVCDLCDKRFTQLVTLKLHLQRHAGLKEFSCQFCTKKFINKQALVIHVRTHTGEKPFVCSFCARAFGDQSARTRHERTHTGVKPYACSYCGMAFSDASGRIVHELRHTGKKQYKCKIFATTRGFRDTRWPCQNEAHFGTATLNGGSGDRFTKVFKCEECSQKFVLESTLKAHAAVHEPFPHVCHCGVGFYEKQDLNGHKQLVHKAELENQLEKLTFRKQRALKNELWVPVINYTGPKEKKEYSEELPKEFSDESSDEFSKKLKKPIRPRLKAELVVKSETKSRTKAGTKSKKINRGNTKAPTGLNKFTCDLCSKTLSSKRILNAHLQSHAGLKEFACNLCDKRFNQQASLKTHLQQHTGLKKFACDLCGKRFFKKQNLELHYRIHAGLKEFVCDLCDKGFTQLVTLKLHLQRHAGLKEFSCQFCTKKFINKQALVIHVRTHTGEKPFVCSFCARAFGDQSARTRHERTHTGVKPYACSYCGMAFSDASGRFMHELRHTGKKQYKCKTSSALPRAGMVAAFDTSVTPLALLCSPTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -