Basic Information

Gene Symbol
stc
Assembly
GCA_947034915.1
Location
CAMQQJ010000401.1:1330012-1360211[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2 4.4e+04 -4.5 1.6 15 19 617 621 616 621 0.81
2 13 0.038 8.5e+02 1.4 1.5 2 10 649 657 649 657 0.93
3 13 0.00018 4 8.8 20.3 4 19 665 680 663 680 0.93
4 13 3.3e-09 7.3e-05 23.9 15.0 1 18 716 733 716 734 0.98
5 13 1.4e-05 0.3 12.4 9.5 1 18 775 792 775 793 0.98
6 13 5.7e-05 1.3 10.4 12.0 1 19 834 856 834 856 0.87
7 13 0.0048 1.1e+02 4.3 6.8 1 11 896 906 896 907 0.94
8 13 0.16 3.6e+03 -0.6 0.5 4 10 911 917 910 919 0.92
9 13 2.5e-05 0.56 11.5 15.8 3 19 925 941 913 941 0.87
10 13 9.8e-05 2.2 9.7 7.8 10 18 988 996 985 997 0.92
11 13 2.4e-07 0.0053 18.0 12.8 1 17 1033 1051 1033 1057 0.83
12 13 0.0015 32 5.9 12.6 1 19 1063 1084 1063 1089 0.87
13 13 1.2 2.6e+04 -3.4 0.2 7 12 1105 1110 1105 1110 0.78

Sequence Information

Coding Sequence
ATGTCTCAGTGGAACAATTCTTACAATTACAACCAGCAGTACCAGGACTCCAACACCTGGAACGGTGAATTAGGCAACCAGTATTCGAACCAGCACAACCAGCAGTACTATCCTACAGCAACAGCACAACCAACATACGAACCGAATAACCAGTACGTGAACTTTCAAGAATTCTTGTCTCAAATGCAGGGCAACTCTGGCGCGGGCAGTTCTGCCCCATACAACAATCAGTATCAAAACTACCCTAACAACCAGTATGAATATCAAAACATGCCCTCAACATCCCAAGATTCTTACTATTCAACaaattcaaatcaaataaatGGAACAGAATATCAATCTACCACACAGAGCCAAAATAAAACTGCACCTGAGACTAACTATAACAGCCAAATGGTATTCAAGTCTAATCTGACACCTACTGCTACCGAATTTGTGCCAAAGGGGACGTCTCATAAACAACCAAGTCCTCCAGAAGACTCTTCCAATTATAATGGACTGGCAGAAGCCAAGAGTGACCATGCTGCTGATATAAACTGGAGAGAAAAACCGTCTTCCCAACCAAGTAGTTCCCGTAGCTCTAACGAACCAAGAAATGATCAGGAATCTAAGAAAAAACCAGAAAAAGAGCGCAGGCGGCGTAACAATGAAGCTCGTAACAGTAGTCAAAAGGAATCTAATAGTCAAAATAATGAGTTTAATAGACAAAATGATACTGAAAGTGGTGAGTATGAATCAAATACTTATGATTCCAAAAAACAAACCACTGAGTATCACAATCGTAATTTTGAAGCCAATAGTAGAAAAATGGACTCGAATAGCCGGAACAGCCGTAAAAATGAGTCAAACCGCAATTATGAGGGTAGCAGCCGGAGTGATTCCAACATCAACAATGATTCAGAGCGTGATTATGGTTCTCAAGACCGTAGCTACTCAAATAGAAATAATGACCCTGATAACCGGCCCCAGGATTCCAGTAGTCGTAACTACGATAGCAATGGCCGTAACTATGACTCTAAAAGACGCAACTTCGAACCCAATAGTCGCAACTATGATTCGAATAATCGCCACTACGACGGCGGTAGTCGCAATTACGACCGCAATCCCGATAGTAGTCGTCGTCCAGATTCTAGCCGCAGCTCTGAATACAACCGTAGAAACGACTTCAATGGCCGCGACAGTGACTATAATAGTCGTAACAATGATACTAATCAGGATAACAGTAGCCGCAACAATGACTATAATCAGGACCACAGTAGTAGGAGTAGCGATTATAGTAGTCGTAATCAGGACTATAACAGTCGTAATGATTACAATGGACGGAACGATTCGAACCGCGGTTATGAAAGTAGGGGCCAAAGCAAAAATTCCAGGAATAACTCTAAGAATAAAGATGCCGATAACCGCACATTCTACAATAGCTCAGCCAACAAGAGTAGCCAAGACGTGAGAAGTGGGAGAAGTGACAGAGGCGAGACCTCTGGGAGGGGCAAGAACTGGGTGGGTAGCCAAAGGGTACGACCACTGGAGAGACCTGATGATGAACAATTTGCTAAAGGCTATTTAGATCATCGAGATGAACGGTACTCGAAAAGTTCGAGGCCAGAATCCACATTCAGCCCTATGAGGAACAGAAATAAACAAATTGATCATGGTGGAAACACAGACATGACCCAACGGGAGCGCCTCTCGGAGCAACTGGACAAAGGGACGTTAGAGTGCCTGGTCTGCTGCGAGAGGGTGAGGCAGATCGACCCGGTGTGGTCCTGCGGAAACTGCTACCATGTGCTGCATCTGCGCTGCATCAGGAAGTGGGCCATGAGCAGCATTATAGAGGGCAAATGGCGTTGCCCGGCGTGCCAGAATACAAGCGCGGACATCCCGGCGGAGTACCGCTGCATGTGCGGCGCGCTGCGCTCGCCCGACTACCAGCGCGGCGCGCACGGCGCCCACACCTGCGGACAGGCATGCCAGCGGACGCGGCCCTGCCCGCACCCGTGCACCCTGCCGTGCCACCCTGGACCCTGCCCGCCCTGCCAAGCCACGGTCTCCAGACAATGCGGCTGCGGCGCCGAGACGCGCTCGGTACTCTGCAGTAGCAAGCTCGCGCAAGTGTGCGGGCGAGTGTGCTCGCGCCAGTTGCAGTGCGGAGTGCACACGTGCGAGCAGGAGTGCCACGAGGGCCCGTGCGAGCCGTGCGCGGCCACCGTCGACCAAGTGTGCTACTGTCCGCTGGCGAAGTCCCGGTCCGTGTTGTGCACGGCGGCGACGGGGCGGGTGGGGGCGTGGTCGTGCGGCGCGGCGTGCGCGCGCGTGCTGTTGTGCGGCGCGCACGTGTGCCGCGCGCTGTGCCACGCGCCGCCCTGCGCGCCGTGCGCGCTGCTGCCCGCCAACGTGCTCACGTGCCCCTGCGGACGGACCGAATTACCCAAGGACAAGCGCAAATCGTGCACGGACCCGATTCCTCTGTGCGGGAACATTTGCGCCAAGCCCTTGCCGTGCGGGCCCGCCGGCGACAAACACTTCTGCAAACTCGACTGCCATGAAGGTCCATGCCCCGACTGCCCAGACAAGACCCTGCTCCCGTGCCGCTGCGGGCACTCCAGCCGCGAGGTGCCGTGCGTGGAACTGCCGCAGATGTTAGATAACGTGTTCTGCCAGAAGAAATGCAACAAGAAACTGTCGTGCGGGCGTCACCGCTGCCGCGCGTCGTGCTGCGCCGCGACGACGCACCGCTGCGGCGTGGTGTGCGGCCGCATGCTGGCGTGCCAGCTGCACCGCTGCGAGCAGTTCTGCCACACCGGCCACTGCGCGCCTTGCACCAGGGCCAGTTTCGAGGAGCTGACGTGCGAGTGCGGCGCGGAGGTGATCCTGCCGCCGGTGCCGTGCGGGGCCAAGAGGCCGGCGTGCTCGGCCCCCTGCCGCCGGCCCCGCGAGTGCTCGCACCCGACGCTGCACTCGTGCCACGCCGGCCCCTGCCCGCCGTGCGTCGTGCTCACCGCCAAGCGCTGCCACGGCCAGCACGAGGAGCGCAAGACGATCCCGTGCTCGCAGGAGGAGTTCTCGTGCGGGCTGCCGTGTGGCAAACCGCTGCCGTGCGGCAAGCACACCTGCCTCAAGATCTGCCACAATGGACCCTGCGAAGCTGGCAAGTGCACCCAACCGTGCAACGAGAAGCGGCCGAACTGCGGGCACCCGTGCTCGGCGCCGTGCCACTCGGGCGACGGGCCCGGCGCGCGCAGCCCGTGCCCCAGCTCCGCGCCGTGCCGCAAGCTCGTGCGCGCCACGTGCCCgtgcggccgccgcgccgccgagcGCTCCTGCCACGACAACGCGCGCGACCTGGCCAAaattatgAGTGCGCTGGCCGCTACGAAGTTACAGGAGGGTGATTCCGTAGACTTGTCCGAAGTGCAACGCCCCGCTTCAATGCTGAAAACGTTGGAGTGCGACGACGAGTGCCGGGTGGAGGCCCGGACGCGGCGGCTGGCGCTGGCGCTGCAGATCCGCAACCCGGACGTGTCGGCCAAGCTGGCGCCGCGCTACAGCGAGCACGTGCGCGCGCTGGCGGCGCGCGAGCCCGGCTTCGCGCGCCAGGTGCACGACAAGCTCACCGAGCTCGTGCAGCGCGCCAAGAAGtcAAAACAGAAGACGCGCGCGCACTCGTTCCCGTCGTGCAACTGGCAGAAGCGGCAGTTCATCCACGAGATGTGCGAGCAGTTCGGCTGCGAGAGCGTCGCCTACGACGCCGAGCCCAACCGCAACGTCGTCGCCACCGCCGACCGGGAGAAGTCATGGCTGCCGGCGATGAGCGTGCTGGAAGTGTTGGCACGAGAGAACGGCAAGCGCCGGGTCCCCGGGCCCGTGCTCCGCGCTCCCCCCGCCCCCGCGTCCGCCTCCGCTGCCGCCTCTGCTGCCAAGCCGACGAGCGGTTGGGCGACGTTAACATCCAACAACGCGTGGGCGGCACGCGCGCAGAAAGCcgaacaacaacaacaacaacaacaacaacagcaacaacaacaacagcaaCAACAACAGCCGCAACAACCGACACGCCCCAAGATAGACTACTTCGACGACCCGCCGGACAACTGA
Protein Sequence
MSQWNNSYNYNQQYQDSNTWNGELGNQYSNQHNQQYYPTATAQPTYEPNNQYVNFQEFLSQMQGNSGAGSSAPYNNQYQNYPNNQYEYQNMPSTSQDSYYSTNSNQINGTEYQSTTQSQNKTAPETNYNSQMVFKSNLTPTATEFVPKGTSHKQPSPPEDSSNYNGLAEAKSDHAADINWREKPSSQPSSSRSSNEPRNDQESKKKPEKERRRRNNEARNSSQKESNSQNNEFNRQNDTESGEYESNTYDSKKQTTEYHNRNFEANSRKMDSNSRNSRKNESNRNYEGSSRSDSNINNDSERDYGSQDRSYSNRNNDPDNRPQDSSSRNYDSNGRNYDSKRRNFEPNSRNYDSNNRHYDGGSRNYDRNPDSSRRPDSSRSSEYNRRNDFNGRDSDYNSRNNDTNQDNSSRNNDYNQDHSSRSSDYSSRNQDYNSRNDYNGRNDSNRGYESRGQSKNSRNNSKNKDADNRTFYNSSANKSSQDVRSGRSDRGETSGRGKNWVGSQRVRPLERPDDEQFAKGYLDHRDERYSKSSRPESTFSPMRNRNKQIDHGGNTDMTQRERLSEQLDKGTLECLVCCERVRQIDPVWSCGNCYHVLHLRCIRKWAMSSIIEGKWRCPACQNTSADIPAEYRCMCGALRSPDYQRGAHGAHTCGQACQRTRPCPHPCTLPCHPGPCPPCQATVSRQCGCGAETRSVLCSSKLAQVCGRVCSRQLQCGVHTCEQECHEGPCEPCAATVDQVCYCPLAKSRSVLCTAATGRVGAWSCGAACARVLLCGAHVCRALCHAPPCAPCALLPANVLTCPCGRTELPKDKRKSCTDPIPLCGNICAKPLPCGPAGDKHFCKLDCHEGPCPDCPDKTLLPCRCGHSSREVPCVELPQMLDNVFCQKKCNKKLSCGRHRCRASCCAATTHRCGVVCGRMLACQLHRCEQFCHTGHCAPCTRASFEELTCECGAEVILPPVPCGAKRPACSAPCRRPRECSHPTLHSCHAGPCPPCVVLTAKRCHGQHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCLKICHNGPCEAGKCTQPCNEKRPNCGHPCSAPCHSGDGPGARSPCPSSAPCRKLVRATCPCGRRAAERSCHDNARDLAKIMSALAATKLQEGDSVDLSEVQRPASMLKTLECDDECRVEARTRRLALALQIRNPDVSAKLAPRYSEHVRALAAREPGFARQVHDKLTELVQRAKKSKQKTRAHSFPSCNWQKRQFIHEMCEQFGCESVAYDAEPNRNVVATADREKSWLPAMSVLEVLARENGKRRVPGPVLRAPPAPASASAAASAAKPTSGWATLTSNNAWAARAQKAEQQQQQQQQQQQQQQQQQQPQQPTRPKIDYFDDPPDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-