Epro002427.1
Basic Information
- Insect
- Eudemis profundana
- Gene Symbol
- -
- Assembly
- GCA_947034915.1
- Location
- CAMQQJ010000022.1:1553862-1563442[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.9 1.5e+02 4.4 2.6 2 11 29 38 28 41 0.87 2 18 1.9 1.5e+02 4.4 2.6 2 11 84 93 83 96 0.87 3 18 1.9 1.5e+02 4.4 2.6 2 11 139 148 138 151 0.87 4 18 1.9 1.5e+02 4.4 2.6 2 11 194 203 193 206 0.87 5 18 1.9 1.5e+02 4.4 2.6 2 11 249 258 248 261 0.87 6 18 1.9 1.5e+02 4.4 2.6 2 11 304 313 303 316 0.87 7 18 1.9 1.5e+02 4.4 2.6 2 11 359 368 358 371 0.87 8 18 1.9 1.5e+02 4.4 2.6 2 11 414 423 413 426 0.87 9 18 1.9 1.5e+02 4.4 2.6 2 11 469 478 468 481 0.87 10 18 1.9 1.5e+02 4.4 2.6 2 11 524 533 523 536 0.87 11 18 1.9 1.5e+02 4.4 2.6 2 11 579 588 578 591 0.87 12 18 1.9 1.5e+02 4.4 2.6 2 11 634 643 633 646 0.87 13 18 1.9 1.5e+02 4.4 2.6 2 11 689 698 688 701 0.87 14 18 0.011 0.85 11.4 2.7 2 23 744 765 743 765 0.96 15 18 2.1e-05 0.0017 19.9 0.2 1 23 771 793 771 793 0.98 16 18 0.018 1.4 10.7 0.1 1 23 799 822 799 822 0.92 17 18 0.012 0.94 11.3 0.2 1 23 828 850 828 850 0.95 18 18 0.00058 0.047 15.4 0.1 1 23 856 879 856 879 0.96
Sequence Information
- Coding Sequence
- ATGGACCGCGTGCACCGCGGCGTGAAGCCGGCGCGCCTGCGCGAGCGGGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGTGAGTTGTGTCACTAGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGTGAGTTGTGTCACTAGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGTGAGTTGTGTCACTAGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGTGAGTTGTGTCACTAGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAAGTCTGCGAGACCTGCGGCAAGACCTTCCGGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGTGAGTTGTGTCACTAGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGTGAGTTGTGTCACTAGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACTTGCGGCAAGACCTTCCGGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGTGAGTTGTGTCACTAGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGTGAGTTGTGTCACTAGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGTGAGTTGTGTCACTAGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACTTGCGGCAAGACCTTCCGGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGTGAGTTGTGTCACTAGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGTGAGTTGTGTCACTAGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGTGAGTTGTGTCACTAGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACCTGCGGCAAGACCTTCCGGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACTTGCGGCAAGACCTTCCGGGTGAGTTGTGTCACTAGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACTTGCGGCAAGACCTTCCGGGCGAGCGAGAGCCGACCGACAGACCCGCCACAACACCCAACAAGGTCTGCGAGACTTGCGATAAGACCTTCCGGTGTCTGGCGCTGCTGAAGCAGCATCAGATCCGCCACACCGGGGAGCGGCCCTTCAAGTGCGAGATGTGTCCCAAGTCCTACGCCAGCGCTGCAGAGCTACGGACGCACCGCGCGCGCCACACGGGGGACAAGCCGCACAAGTGCGAGATGTGCAACAACAGCTACGGAACCGCCGCCGCCCTCAAGGTACACGTGGAGGCTGTGCACATCCGGGAACGGCAGTACCGCTGTGGACAGTGCCCGAAGACCTTCCTGCGTGCCACTGCGCTATCTGTGCACAAAGTCGTTCACACGGGGGAGAAGCGGTTCGAGTGCGCAGAATGCGGCGGCAAGTTCACGCAGGCGGGCTCGCTCGCCACGCACCGCAAGTACGTGCACCTCAAACTGAAGCCGCCGCCGCGGAAGCGCGGCAAAATCCCAGACAACTACTAG
- Protein Sequence
- MDRVHRGVKPARLREREPTDRPATTPNKVCETCGKTFRVSCVTRRARADRQTRHNTQQGLRDLRQDLPGEREPTDRPATTPNKVCETCGKTFRVSCVTRRARADRQTRHNTQQGLRDLRQDLPGEREPTDRPATTPNKVCETCGKTFRVSCVTRRARADRQTRHNTQQGLRDLRQDLPGEREPTDRPATTPNKVCETCGKTFRVSCVTRRARADRQTRHNTQQSLRDLRQDLPGEREPTDRPATTPNKVCETCGKTFRVSCVTRRARADRQTRHNTQQGLRDLRQDLPGEREPTDRPATTPNKVCETCGKTFRVSCVTRRARADRQTRHNTQQGLRDLRQDLPGEREPTDRPATTPNKVCETCGKTFRVSCVTRRARADRQTRHNTQQGLRDLRQDLPGEREPTDRPATTPNKVCETCGKTFRVSCVTRRARADRQTRHNTQQGLRDLRQDLPGEREPTDRPATTPNKVCETCGKTFRVSCVTRRARADRQTRHNTQQGLRDLRQDLPGEREPTDRPATTPNKVCETCGKTFRVSCVTRRARADRQTRHNTQQGLRDLRQDLPGEREPTDRPATTPNKVCETCGKTFRVSCVTRRARADRQTRHNTQQGLRDLRQDLPGEREPTDRPATTPNKVCETCGKTFRVSCVTRRARADRQTRHNTQQGLRDLRQDLPGEREPTDRPATTPNKVCETCGKTFRVSCVTRRARADRQTRHNTQQGLRDLRQDLPGEREPTDRPATTPNKVCETCDKTFRCLALLKQHQIRHTGERPFKCEMCPKSYASAAELRTHRARHTGDKPHKCEMCNNSYGTAAALKVHVEAVHIRERQYRCGQCPKTFLRATALSVHKVVHTGEKRFECAECGGKFTQAGSLATHRKYVHLKLKPPPRKRGKIPDNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -