Epro024686.1
Basic Information
- Insect
- Eudemis profundana
- Gene Symbol
- -
- Assembly
- GCA_947034915.1
- Location
- CAMQQJ010000242.1:2447341-2464155[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.4e-05 0.002 19.7 2.5 1 23 153 175 153 175 0.98 2 17 0.0019 0.15 13.8 5.3 2 23 182 203 181 203 0.97 3 17 0.00029 0.023 16.4 3.4 1 23 209 231 209 231 0.98 4 17 8.6e-05 0.0069 18.0 5.4 1 23 237 259 237 259 0.98 5 17 0.002 0.16 13.7 5.9 5 23 268 286 265 286 0.95 6 17 0.0021 0.17 13.6 0.1 1 23 293 315 293 315 0.98 7 17 0.019 1.5 10.7 3.1 2 23 328 349 327 349 0.97 8 17 8.9e-05 0.0072 18.0 3.4 1 23 355 377 355 377 0.98 9 17 0.0029 0.23 13.2 5.5 1 23 383 405 383 405 0.97 10 17 0.058 4.7 9.1 8.5 5 23 414 432 411 432 0.95 11 17 0.042 3.4 9.5 0.4 1 21 440 460 440 462 0.94 12 17 2.2 1.8e+02 4.1 0.5 2 21 477 499 476 501 0.91 13 17 2.2 1.8e+02 4.1 0.5 2 21 516 538 515 540 0.91 14 17 2.2 1.8e+02 4.1 0.5 2 21 555 577 554 579 0.91 15 17 2.2 1.8e+02 4.1 0.5 2 21 594 616 593 618 0.91 16 17 2.2 1.8e+02 4.1 0.5 2 21 633 655 632 657 0.91 17 17 2.2 1.8e+02 4.1 0.5 2 21 672 694 671 696 0.91
Sequence Information
- Coding Sequence
- ATGTCTAATAAACCTATCTCTGTGCAACAAGACCCCTGTTCTCTCATCAAGAACGAAGTATTTATCGAAGTCGAGTTAGATCTTGGAACACCGAGACAAGAATGCGAATCTAGTGTTTTGGAgcagataaatattaaaattgagGCTGGACATGATACGGACAGCGAGGCTGTTGAGTCTGAGGACTGTTTGGGTGGAAATAGGCCCAAAATCAAGTCTGAAAGGAAGTCTTTGGAAAATGATAGGAATATAGAAGATAAAGAGGATTTAGGCAGTAACGAAGCGGAAGTTAGTGATAGTGATGTGTTCTCGAGTCGTGTGGTTAAGGAGGAGCTAGCCGAGAGCTCTGTGGAAGTCCAGGATCCGTTGGCGACCGAAAATTGTGAAGAAGCTACTGATACAGAGCCAGCGTTCTTGGAGGTCACAGTTCCGTCACTGGAGCTCCAAGCCAAGCCGTATGAATGTAACATATGCCATGAGCGCTTCACCTTTGAAAACAATCTGCAGGTCCACCGCCGCCTTCACGACGACAGTCGCAGCCTCAAATGCAGCACCTGCCAGCGCCAGTTCTCCAGCACCAGAACGTACGAGCACCACATGCGCTCGCACATGCGCAAGCGCCCCTTCGAGTGCCACCACTGCGGGAAGCTCTTCACGCAGAAGAATATCCTGGAGAACCATGTCAGGGTACATTCCGGTGAGAAGCCTTTCACCTGCGACATTTGCCACCGGCAGTTCAAGCAGTCGGCCCACCTCACTGAACACCGGAAACTCCACTCCGGAGAGAGGCCCCACTCCTGCCACTGCGGGAAGCAGTTCAAGAGGAGAAGCAACCTACTTCGACATGCCACTACACACAGAGACGAGACGGTGACGTACCCGTGCCAGTTGTGCGGCAAGCGCATGCGCTCCGAGGCCAAGCTCGCCAAGCATGTGCGCGCGCACCAACAACCACCTGACGAGGTGTGCGAGCGCAGCATCAAATGCAGCACGTGCCAGCGGCACTTCTCGAGCGTGCGAACGTTCGAGTTGCACGCGCGCTCGCACACGCGCTCGCGCCCCTTCGAGTGCCACCACTGCGGGAAACTGTTCACGCAGAAGAACATCCTGGAGAACCACATCAGGGTACACTCCGGAGAGAAGCCGTTTTCCTGCGAGACATGCCATAAGCAGTTCAAGCAGATGGCCCACCTCCTGGAGCACCGGAAACTGCACACCGGCGAGATGCCGCACTCCTGCCACTGCGGCCGGCAGTTCCGGAAGAAGAGTAATTTGCACCGCCACGCAACCACGCACAGAAGCGGCGAGACGGTGATGTTTCCCTGCCTGGTGTGCGGCAAGCGCATGCGCACCGCGGACAAgctcgccgcgcatgcgcgctgCCACGACGAGCCCTACACGTGCGAGTGTGGCGAACAACTCTCCAGCCAGTGTAACACCGTCATAGTGTGCGACCGGCGCATGCGCACCGCGGACAAgctcgccgcgcatgcgcgctgCCACGACGAGCCCTACACGTGCGAGTGTGGCGAACAACTCTCCAGCCAGTGTAACACCGTCATAGTGTGCGACCGGCGCATGCGCACCGCGGACAAgctcgccgcgcatgcgcgctgCCACGACGAGCCCTACACGTGCGAGTGTGGCGAACAACTCTCCAGCCAGTGTAACACCGTCATAGTGTGCGACCGGCGCATGCGCACCGCGGACAAgctcgccgcgcatgcgcgctgCCACGACGAGCCCTACACGTGCGAGTGTGGCGAACAACTCTCCAGCCAGTGTAACACCGTCATAGTGTGCGACCGGCGCATGCGCACCGCGGACAAgctcgccgcgcatgcgcgctgCCACGACGAGCCCTACACGTGCGAGTGTGGCGAACAACTCTCCAGCCAGTGTAACACCGTCATAGTGTGCGACCGGCGCATGCGCACCGCGGACAAgctcgccgcgcatgcgcgctgCCACGACGAGCCCTACACGTGCGAGTGTGGCGAACAACTCTCCAGCCAGTGTAACACCGTCATAGTGTGCGACCGGCGCATGCGCACCGCGGACAAgctcgccgcgcatgcgcgctgCCACGACGAGCCCTACACGTGCGAGTGTGGCGAACAACTCTCCAGCCAGGTCAGTATGAGATGTTACTATAGTATAGTGTAA
- Protein Sequence
- MSNKPISVQQDPCSLIKNEVFIEVELDLGTPRQECESSVLEQINIKIEAGHDTDSEAVESEDCLGGNRPKIKSERKSLENDRNIEDKEDLGSNEAEVSDSDVFSSRVVKEELAESSVEVQDPLATENCEEATDTEPAFLEVTVPSLELQAKPYECNICHERFTFENNLQVHRRLHDDSRSLKCSTCQRQFSSTRTYEHHMRSHMRKRPFECHHCGKLFTQKNILENHVRVHSGEKPFTCDICHRQFKQSAHLTEHRKLHSGERPHSCHCGKQFKRRSNLLRHATTHRDETVTYPCQLCGKRMRSEAKLAKHVRAHQQPPDEVCERSIKCSTCQRHFSSVRTFELHARSHTRSRPFECHHCGKLFTQKNILENHIRVHSGEKPFSCETCHKQFKQMAHLLEHRKLHTGEMPHSCHCGRQFRKKSNLHRHATTHRSGETVMFPCLVCGKRMRTADKLAAHARCHDEPYTCECGEQLSSQCNTVIVCDRRMRTADKLAAHARCHDEPYTCECGEQLSSQCNTVIVCDRRMRTADKLAAHARCHDEPYTCECGEQLSSQCNTVIVCDRRMRTADKLAAHARCHDEPYTCECGEQLSSQCNTVIVCDRRMRTADKLAAHARCHDEPYTCECGEQLSSQCNTVIVCDRRMRTADKLAAHARCHDEPYTCECGEQLSSQCNTVIVCDRRMRTADKLAAHARCHDEPYTCECGEQLSSQVSMRCYYSIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -