Epro033137.1
Basic Information
- Insect
- Eudemis profundana
- Gene Symbol
- -
- Assembly
- GCA_947034915.1
- Location
- CAMQQJ010000388.1:183452-185978[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.23 19 7.2 0.1 2 23 109 131 108 131 0.94 2 17 0.029 2.3 10.1 0.4 3 23 156 176 154 176 0.95 3 17 0.65 52 5.8 0.7 1 23 180 202 180 202 0.94 4 17 0.017 1.4 10.8 1.9 1 23 207 230 207 230 0.96 5 17 0.32 26 6.8 0.3 2 23 238 260 237 260 0.92 6 17 0.22 18 7.3 3.3 2 23 268 290 268 290 0.94 7 17 0.00019 0.015 16.9 2.2 1 23 296 318 296 318 0.96 8 17 1.1 86 5.1 3.2 1 23 411 434 411 434 0.89 9 17 0.5 40 6.2 0.1 2 23 459 481 458 481 0.93 10 17 0.096 7.7 8.4 5.0 2 23 506 527 505 527 0.97 11 17 0.0022 0.18 13.6 0.5 1 23 531 553 531 553 0.98 12 17 0.05 4 9.3 2.2 1 23 558 581 558 581 0.96 13 17 0.13 11 8.0 0.4 2 23 589 611 588 611 0.92 14 17 0.00042 0.034 15.9 0.4 2 23 619 641 618 641 0.97 15 17 4.4e-05 0.0036 18.9 1.4 1 23 647 669 647 669 0.98 16 17 4.8e-06 0.00039 22.0 2.4 1 23 675 697 675 697 0.98 17 17 0.0016 0.13 14.0 5.4 1 23 703 726 703 726 0.98
Sequence Information
- Coding Sequence
- ATGGaagatataaataaagtacGCGGCAAACGCGGTTGCAAAGAGAGAAAGGTGAAACCAAAAATCACCGACAAATCGATTGTTTTCAAAAGAACTACCGAATTAGATTTACATGTCCAGAATCTACAAACAGTTATGAGATGTTCCAATGCTACACCATTAAGAATGCATGGTAAATGGTATACGTGCTGTTTCTGTCCTGAACGTCATAATGATACGGCAGCCTTGAAAAAGCACACAACAGAGAAACATCCAGATGGCAAATCTGCACTCATCGAACGGAACTTGTCAAAGCTAATGATAAGACTGGATATAACCAATTTGCAATGCAGCCTTTGCAATATAGAAATCACTGGACTCGATACATTGATGAAACATTTGAAAGATGAACACTCTCAAAATATAAACACGCGCATTAAAAACTACATGATCCCTTTTAAATTTAACGCCGATAGGGAGTTAGCATGCGTGATTTGTAATGTCGAGTTTAACAATTTTAAGATGCTCGTTCAACATATGCATGCCCATTACCCCAACTTTGTGTGTGGCGCTTGTGGCAGCGGCTTCGTGAATCAGAAGAGCCTCCAGTGTCATGCTAGCCGACATGCCAACGGAGAGCATAAGTGCGAGACATGTAAACGGATCTTCGACAACGACGTCAAACTAAAAGAACATGAGAAATCTGTGCACAGGGGATTTAATAAACGGAACAAATGTGATCACTGCGAAGAACGGTTTGTTGGATACATTGCAAAGACCGCTCACATGATAGAAATGCACGGCATGCCAGCTAACCAGGCCAAGTGTGCAGCCTGTGAAAAGACTTTTAAAAACTTCAAATGCCTGGCAATGCACAAGCGGGCGTTCCACATGTTGGAGAAGAAACACAAATGCCCTGAATGCGATAAAATGTTTTTCTCTACTTACCAAGTAAAGAAGCATTTGGTGATTCACACGGGAGAGCATGGACCCGAGAAAAGGAGATTCAATATAAAAGTCGAGGTTGAGTTGGCGACAGAAGATAAAACCACGTCAACTGAAGAGCTAGCTGCTGCTAAAGACAAGGATCTGGCACAGGGAGTTGGCGATTCCCAACGTCCAACGCCAACTAAAAAACCCGTAGCCAAGAATGCTGTTAAGAAACCTAGTGAATTTGATTTACACATCCAGAATCTGCGGACAATTATGAGGTGTTCCAACGCCACGCCATTGAGACTACACGGCAAGTGGTATACCTGCTGCTGTTGTCCTGAACGGTTTGACGACACTGCGGCTTTGAAAAAGCATACAGCGGACAAACATCCTGAAGGGCAGAATGCATTCTTTGGCCGGGACATTGCACAGCTAATCATAAGAGTGGATATAACGGATTTGCAATGCAAACTTTGCGATGTCAAAATCTACAGCATCGCGCAGTTGATGGAACATTTAAAGGCTGAACACTCAGAAACAATACATTCGATAGAGAAGAACTACATGGTACCTTTCAAATTTGACACAAACAGAAAAGACTTAAAATGTGTGATCTGTGAACACGAATTTCACAATTTCAAAACGCTGGTGCACCACATGAATATACATATCCCTAACTTCGTGTGTAACACTTGCGCCAGTGGGTTTGTGAATCAAAGGAGTCTGCAAAATCACGTGAGGCAACACGCGAATGGAGAACACAAGTGCGAGACGTGTCAGCGGATTTTCAACAACGACCTCAAATTGAAAGAGCACGAAAAATCCATCCATTTGGGATTCAACAAACGTAACAAATGCGATTATTGCGATGAACGCTTCAACGGGACTATAGCGAAAAACACCCACATGGTCAAAGTCCATGGGAAACCAGCAATTGAAGTCAAGTGTCCGGCTTGCGAAAAACCTTTCAAAAGCTACAAATATCTAGCCATTCATAAACGTACGTACCATATGATGGAGAAGAGGCACAAATGTCCGGAATGCGATAAAATGTTCTTCTCTACGCCTGAAGTGAAGAATCATATGCTGACGCACACAGGGCAACGTGACTTCCACTGTGGTGTTTGTAATAAATCCTACGGCAGGAAGAGCACGTTAAGGGAACATATGAGAATTCACGCCGACGATCGTAGATTCAAGTGTGAGCATTGTGAGATGACGTTTGTCCAGAAATGTAGCTGGCGGGGACATATGAGATCTAAACACGGAGAAGAAGTGTAA
- Protein Sequence
- MEDINKVRGKRGCKERKVKPKITDKSIVFKRTTELDLHVQNLQTVMRCSNATPLRMHGKWYTCCFCPERHNDTAALKKHTTEKHPDGKSALIERNLSKLMIRLDITNLQCSLCNIEITGLDTLMKHLKDEHSQNINTRIKNYMIPFKFNADRELACVICNVEFNNFKMLVQHMHAHYPNFVCGACGSGFVNQKSLQCHASRHANGEHKCETCKRIFDNDVKLKEHEKSVHRGFNKRNKCDHCEERFVGYIAKTAHMIEMHGMPANQAKCAACEKTFKNFKCLAMHKRAFHMLEKKHKCPECDKMFFSTYQVKKHLVIHTGEHGPEKRRFNIKVEVELATEDKTTSTEELAAAKDKDLAQGVGDSQRPTPTKKPVAKNAVKKPSEFDLHIQNLRTIMRCSNATPLRLHGKWYTCCCCPERFDDTAALKKHTADKHPEGQNAFFGRDIAQLIIRVDITDLQCKLCDVKIYSIAQLMEHLKAEHSETIHSIEKNYMVPFKFDTNRKDLKCVICEHEFHNFKTLVHHMNIHIPNFVCNTCASGFVNQRSLQNHVRQHANGEHKCETCQRIFNNDLKLKEHEKSIHLGFNKRNKCDYCDERFNGTIAKNTHMVKVHGKPAIEVKCPACEKPFKSYKYLAIHKRTYHMMEKRHKCPECDKMFFSTPEVKNHMLTHTGQRDFHCGVCNKSYGRKSTLREHMRIHADDRRFKCEHCEMTFVQKCSWRGHMRSKHGEEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -