Epro041187.1
Basic Information
- Insect
- Eudemis profundana
- Gene Symbol
- -
- Assembly
- GCA_947034915.1
- Location
- CAMQQJ010000848.1:691705-707902[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00063 0.051 15.3 1.5 1 23 248 270 248 271 0.95 2 13 0.1 8.2 8.3 1.9 1 23 278 300 278 300 0.97 3 13 0.55 44 6.0 3.7 1 23 304 326 304 326 0.93 4 13 0.0014 0.12 14.2 1.3 1 23 331 354 331 354 0.97 5 13 1.6 1.3e+02 4.6 0.1 2 23 360 382 359 382 0.77 6 13 0.23 18 7.2 0.0 3 20 393 410 392 412 0.93 7 13 0.00037 0.03 16.0 0.6 3 23 423 444 422 444 0.96 8 13 0.013 1.1 11.1 0.7 2 23 450 472 449 472 0.94 9 13 0.00022 0.018 16.7 2.2 1 23 495 517 495 517 0.98 10 13 1.6e-05 0.0013 20.3 2.6 1 23 523 545 523 545 0.96 11 13 0.0015 0.12 14.1 1.5 3 23 553 573 551 573 0.96 12 13 1.8e-06 0.00014 23.3 1.6 1 23 579 601 579 601 0.97 13 13 5.8e-05 0.0046 18.6 0.4 1 23 607 630 607 630 0.95
Sequence Information
- Coding Sequence
- atgttgaaaGGGTTGAAGTTAGAGGATTCAGACGAGCTGTTAGCATGTCGCATTTGTCTGTCCACCGATGTCAAGCTATACGGAATTTTGGAACACCAATTAAATGAAGATTTTATTGATATTACCGGCACAGCGCTATCAGCATGGGACGGGTTCCCGCAGCATATATGCAGCGTgtgccgcgcgctgctgcggCGCGCCGCGGACCTGCGCGCGCGCAGCCGCACCGCGCAGGACCAGCTCAAGCGCATCCTCATGCACCACCACTTCATAACAACAGAGTTCATCCGCTCGGTGGACCGGGCCGCGGTCGGGCTGAGTCTGCCGCTCGCCACCGCCGTCTGCCCCGAGCCCATCGACTGCTACTACGGAGACCTGATCAAGGAGGAACTGCCTCTTCTTTCCCCCTCCCCTCCCCCACTTCCCTCCCCCCTCCCGCCCCCCTCCCCGGAGGAGTGCAAGGACGTGAGCTTGAAGTTGGAAGACGACTCCAATGATGACGTGGCGCTCAGCGAGCTCCAGccgaaagaaaagaaaaagaagCAGCTGAGGAAATCCAAGACGAAAAAGGTGAAGACAGAGAAAGCGAGTAAAGCGAGGAGAAAAACCGAGAAGATCCGGGACGAGGACTTCCCCGCCTTCGAGCGCGAGTACAACTTCGACGTCGTCATACTGTCGAGGGACCAGCAGGTGGAAGACATGGCGGCGAGGAAAGAAAAGGACAACTACATGAACTCTTTGTTCAAATGCGAGAAGTGCTTCAAGGGGTTCTACACGGCCGCAACGCTCGCCAACCACGCCGCTAAACACCACGACGAGAGCGTGGGTCCGCACGAGTGTGACCTGTGTCAATGCCGGTTCCGGATCCCGGCCATATTGCGGCGGCACCTCGCCACGCATCGGCTGCGGTTTTTGTGTCAGCACTGCGGGTTCACTGCTAGAGATAGGTCGCACGCCATGACGCATTCGAAGGAACACAAGGGACTGCGATATGAGTGCCAGTACTGTGGAGACACTTTTAAGAAGCGGTCCACGTACGGCACCCATGTTCGTATCCAGCATCCCAACGAGAACAAATCGTGTGACGTGTGCGGGGAAACCTTCCTCGGAGCTCTTGGGCTCGCGCTACACAAAAAGAAATCGCATCGACAGGGTGTGGAGACTGGTGCGGCGCATTGCGACGTGTGCGGCGTGCGCTTCGAGAGCGAATATGCGCGTGCGCGGCATATAGCGCTTGCCGTCAAGGGTTGCCAGAATACCAGGGCGTGTTCTCTGTGCGGCGAGAACTTCAAGGACGAGGCCACGCTGCACGCGCACCAGCGCGAGCGACACTCCATCCGGGAGACGCAGTGCCACGAGTGTGACATGACGTTCGCGAGCGAGGCGTCCCGCAGCGTGCACTACGAGCGCGTGCACCTCAAGGTGAAGGTGCGGCGTTGCCTGCCCAAGACCGGCCGCAAGTACGACCGCTACGGCGACCACTTCATGTGCGAAATGTGCGGGAAGAAGTGCCAGAACAACATCGCGCTGAAGTACCACATCCGGTCACACACGGGGGAGAAGCCGCACGCGTGCCCGCACTGCCCCAAGCACTACTCCACGCCCGTCGCGCTGCAGTACCACATCCGGTCGCACACGGGCGACAAGCCGCTGGCGTGCCCGCACTGCCCGCTGCGGTACGCCACCCACAAGGGGTTGCAGACGCACCTGCTGAAGCACACGGGCGAGCGGCCGTTCAAGTGCGAGCTGTGCGGGAAGGCTTTCACGCAGAAAACCATGCTCCAGAAACACAAGACCGTTCACACGGGGGAGAAGCCCTTCGCGTGTGCGATCTGCGGCAAAGCCTTCACGCAGTCCGGCTCCGTCCACACCCACATTAAGTACGTGCACAAGAAGCTGCCTGCTCCTCCACGGAACCGCGGCAAGCGGGACAAACCCGACTGA
- Protein Sequence
- MLKGLKLEDSDELLACRICLSTDVKLYGILEHQLNEDFIDITGTALSAWDGFPQHICSVCRALLRRAADLRARSRTAQDQLKRILMHHHFITTEFIRSVDRAAVGLSLPLATAVCPEPIDCYYGDLIKEELPLLSPSPPPLPSPLPPPSPEECKDVSLKLEDDSNDDVALSELQPKEKKKKQLRKSKTKKVKTEKASKARRKTEKIRDEDFPAFEREYNFDVVILSRDQQVEDMAARKEKDNYMNSLFKCEKCFKGFYTAATLANHAAKHHDESVGPHECDLCQCRFRIPAILRRHLATHRLRFLCQHCGFTARDRSHAMTHSKEHKGLRYECQYCGDTFKKRSTYGTHVRIQHPNENKSCDVCGETFLGALGLALHKKKSHRQGVETGAAHCDVCGVRFESEYARARHIALAVKGCQNTRACSLCGENFKDEATLHAHQRERHSIRETQCHECDMTFASEASRSVHYERVHLKVKVRRCLPKTGRKYDRYGDHFMCEMCGKKCQNNIALKYHIRSHTGEKPHACPHCPKHYSTPVALQYHIRSHTGDKPLACPHCPLRYATHKGLQTHLLKHTGERPFKCELCGKAFTQKTMLQKHKTVHTGEKPFACAICGKAFTQSGSVHTHIKYVHKKLPAPPRNRGKRDKPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00773163;
- 90% Identity
- -
- 80% Identity
- -