Epro037940.1
Basic Information
- Insect
- Eudemis profundana
- Gene Symbol
- -
- Assembly
- GCA_947034915.1
- Location
- CAMQQJ010000550.1:4986-27426[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00055 0.044 15.5 0.4 3 23 55 75 53 75 0.97 2 16 0.16 13 7.7 1.1 2 23 84 107 84 107 0.89 3 16 1.3e-05 0.001 20.6 0.3 1 23 115 137 115 137 0.98 4 16 0.0017 0.14 13.9 0.5 1 23 142 165 142 165 0.95 5 16 2e-05 0.0016 20.0 1.9 2 23 176 197 175 197 0.96 6 16 0.11 9 8.2 0.9 1 23 203 226 203 226 0.93 7 16 0.021 1.7 10.5 1.3 1 23 432 455 432 455 0.96 8 16 0.00017 0.014 17.1 1.0 1 23 462 484 462 484 0.97 9 16 0.012 1 11.2 0.4 2 23 520 542 519 542 0.96 10 16 5e-05 0.004 18.8 0.3 2 23 545 567 544 567 0.96 11 16 0.012 0.93 11.3 1.6 1 23 573 595 573 595 0.98 12 16 8.7 7e+02 2.3 0.3 3 22 606 625 605 629 0.90 13 16 0.0007 0.056 15.2 5.0 1 23 634 657 634 657 0.91 14 16 0.0057 0.46 12.3 2.9 1 23 663 685 663 686 0.96 15 16 4.7e-06 0.00037 22.0 1.7 1 23 694 716 694 716 0.96 16 16 0.0011 0.086 14.6 0.5 1 23 722 745 722 745 0.96
Sequence Information
- Coding Sequence
- ATGCGCATGCGCAAGCGCGTAGCGTCGCTGCTGCGGCGCGTGCGCGGCAGCGCCAACAGCCTCCTAGCCACGGTCGCAGGCAGGGTGGACGGCCCGTTCTATAAAGCCTGGAATAGTATGCATGTGTCGCCTAGGATCCACACGGGAATGCCTATGCTTGCCTGCCCAGAGTGCGGTGGACAGTACCGCGGGCGCTCGAGCCTCCACACGCATATGCTCACACACCGGACTAAGATTGACGAAGCCGCGTACTGCAAGGAGTGCAACATCCAGTTTAAAAACATGGTTCTTTACAAGGGCCACTTGAAATCAAATAAGCATGTTCCGGAAGAACAGTTCGAGTTTCAATGTGAGGTGTGCGCTAGGAGATTCGTGCGTCGCAACGCGCTGCAACGCCACATGGACGTACACAGGGGCACGATCTATCCCTGCGACCAGTGCGATcagTCGTTCAACTCGCGTTACGGACGCCGCGACCACGTGCGGGCCACGCACGAGGGCAAGCCGAAACGCCGGCCCGAGTGCATCTGCGATTATTGCGGGAAATCCTTCACGTCAAAATACATGATCTCGGAGCACATAAACACGCACACAGGCGCGCGGCCGCATGTGTGCAAGATTTGCGGGGACGACTTCGGATACAAGAGCGCCCTCTATCTACACGGACGGTTCAAACACAACATACCGAAGAAACccaagaaatatgttaaaTTGCAAGATCTGAAATGTCTCAGTACTTTATCAAGTACTGGTGCTAACACATTGAGCTACCCCGAACACAATAATCCTGTCAATTCTGACACCGTAAATCAGCCTAAAGATATAAAAAAGGAATCAGATGAAGAAGATGCAAAAGATAATTCCGTTTGCGACTATGATGAGAAGCCAGCATTGGACTCAGATATTTACGTAGAAGAGAGTGAAATAAAAGAGAAGTTAGCATTTGAGTCAAATATTTATGTACAAGAGAGTGAAACAAAAGAGAAGTTAGCATTAGATTCAGATATTTACGTACATGAGAGTGAAATTAAAGAGAAGTTAGCATTCAACTCAAATATTTACGTACAAGAGAGTGAAACAAAAGAGAAGTTAGCATTAGACTCAGATATTTCTGTACAAGAGAGTGAAATTAAAGAAGTTACCGTAAAAAAGAAAGTTAAACTAGCACGAGGCAAAAGAAAAAAGAATGATAACGGCATTAAAGACAAGTTTATAGAAGTAGAGATTACAGAAGAGGAGATGGTCAAAAGCAGAGAAGAGAAGAGAAGTCACCCGAATTTCAAAAAGTTGCCATACAATTGTGATAGCTGCGTTCTAGGGTTTACAAGGAAGCAAAATTATGACACGCACATGGAAAAGAAACATAATACGGCTATTGGCTCCCACGTATGCCCAGTATGCAAAGTCCGCTTCTCCTTCCCTAACTCTTTAGCTAAGCATGTTAAGAAGCACTATAATTTCTACCGGTGCAAACTATGCACTTATGAGACAACGGAGCTCTGGTCTGCCCTGAATCATTGCCGGAGTAAGCACAGTGAGGACACGGAGGACAGCATACACTGCCCGCAGTGCAGCTATATAGCTAAGACGCCGTCGGAGTTGGCGGAACATAAGAAAACCCAGCATTCTCTGATTTGCAAGGAGTGCGGGGAGAAATTCGTGGGACGAAACACCCTCAAGACACACATACGCCGCATCCACAGTACCGCCCGCGAGCACAAATGTGACACGTGCCAGCGGGCGTTCCTCACGCGCGGCCGCCTCGAGGCACACATGACGTCAcacggcgccgccgccgcccagcgCCTCGCCTACTGCCAACTCTGCCAAGTCCAGTACAAGAACATATACGTGTACCGGAGCCATCTGCTCACTAGCGCCAACCACAGCGAGCGGAGgtTCCATTGTGACGAGTGTGGTAAGAAGTTCGCGTCCAAAGTGTATTTCAAAAGGCACTACACGTTCTACCATCAGAAGAAATCTCCGTTCAAATGCGAACTCTGTAACCGGCTGTTCATATCGGAGTGGCGTCTGCGCAGCCACCGACAGACGCACCACGGCCTGCCGCGCGCGCGCAACCACGCGTGCGACCAGTGCGGCAAAAAATTCTATACTAGTGCAACATTAAAAGCGCACCAACTGACGCACTCGGCGCAGCGCACGTTCATGTGCTCGTACTGCGGGGACACGTTCAAGCAGCGGCCCGCGCTCTACACGCACACGAGGGCCGTGCACCGCGCGAGGCACCACTAG
- Protein Sequence
- MRMRKRVASLLRRVRGSANSLLATVAGRVDGPFYKAWNSMHVSPRIHTGMPMLACPECGGQYRGRSSLHTHMLTHRTKIDEAAYCKECNIQFKNMVLYKGHLKSNKHVPEEQFEFQCEVCARRFVRRNALQRHMDVHRGTIYPCDQCDQSFNSRYGRRDHVRATHEGKPKRRPECICDYCGKSFTSKYMISEHINTHTGARPHVCKICGDDFGYKSALYLHGRFKHNIPKKPKKYVKLQDLKCLSTLSSTGANTLSYPEHNNPVNSDTVNQPKDIKKESDEEDAKDNSVCDYDEKPALDSDIYVEESEIKEKLAFESNIYVQESETKEKLALDSDIYVHESEIKEKLAFNSNIYVQESETKEKLALDSDISVQESEIKEVTVKKKVKLARGKRKKNDNGIKDKFIEVEITEEEMVKSREEKRSHPNFKKLPYNCDSCVLGFTRKQNYDTHMEKKHNTAIGSHVCPVCKVRFSFPNSLAKHVKKHYNFYRCKLCTYETTELWSALNHCRSKHSEDTEDSIHCPQCSYIAKTPSELAEHKKTQHSLICKECGEKFVGRNTLKTHIRRIHSTAREHKCDTCQRAFLTRGRLEAHMTSHGAAAAQRLAYCQLCQVQYKNIYVYRSHLLTSANHSERRFHCDECGKKFASKVYFKRHYTFYHQKKSPFKCELCNRLFISEWRLRSHRQTHHGLPRARNHACDQCGKKFYTSATLKAHQLTHSAQRTFMCSYCGDTFKQRPALYTHTRAVHRARHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -