Epro030151.1
Basic Information
- Insect
- Eudemis profundana
- Gene Symbol
- -
- Assembly
- GCA_947034915.1
- Location
- CAMQQJ010000330.1:841026-847247[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.01 0.8 11.5 0.3 1 20 56 75 56 77 0.95 2 22 0.015 1.2 11.0 0.5 2 23 149 170 148 170 0.97 3 22 0.0035 0.28 12.9 0.1 1 23 174 196 174 196 0.96 4 22 0.25 20 7.1 0.4 1 15 201 215 201 224 0.78 5 22 3 2.4e+02 3.7 0.9 1 12 308 319 308 322 0.88 6 22 1.3 1.1e+02 4.9 0.1 1 23 361 383 361 383 0.91 7 22 0.0024 0.19 13.5 3.8 1 23 451 473 451 473 0.97 8 22 0.014 1.2 11.0 0.2 3 23 479 499 478 499 0.95 9 22 0.0074 0.6 11.9 0.4 1 23 507 530 507 530 0.95 10 22 0.092 7.4 8.5 0.6 1 23 536 559 536 559 0.97 11 22 0.13 11 8.0 3.3 1 23 565 588 565 588 0.96 12 22 0.00044 0.035 15.8 0.2 1 23 594 616 594 616 0.96 13 22 3.2e-05 0.0026 19.3 1.4 1 22 622 643 622 643 0.97 14 22 1.9 1.5e+02 4.4 2.8 1 23 703 726 703 726 0.94 15 22 0.027 2.2 10.2 2.3 1 23 792 814 792 814 0.96 16 22 8e-05 0.0065 18.1 1.5 1 23 818 840 818 840 0.98 17 22 0.0072 0.58 12.0 0.1 1 23 845 868 845 868 0.95 18 22 0.0014 0.11 14.2 2.7 1 23 874 897 874 897 0.98 19 22 0.023 1.8 10.4 1.6 1 23 904 927 904 927 0.95 20 22 0.00057 0.046 15.4 0.9 1 23 933 955 933 955 0.96 21 22 1e-05 0.00084 20.9 0.5 1 23 961 983 961 983 0.99 22 22 8.6e-06 0.00069 21.2 3.0 1 23 989 1011 989 1012 0.96
Sequence Information
- Coding Sequence
- ATGATAAAGATAGAGCCTAACGATATACCAATAGAAAGTTTACTTGGAGAAAAACCAAGATACCAGCGAAGCGCTCGAGCAGAGGCTAGGTTCGCCACGAAGAAAAATGCCACCGCCATACTCGAGTGCTGGTCCGTAAGCCCCTTCAGGTGGAAGCGGAACCAGTTCAAATGCGCCTATTGTGAAGCCAATTTCACCGATTGCGCGCTCCTGCGACTTCACATAGGGACGTGCTCGCGCGAACACAGTGTCAAAGACATCTACAGCAAGTTCAAGGAAATGTCCCTCATCAATGTCGACGTGACGGATACCGCGTGCCGTCTCTGCGCATTGCCGTACAGCGACATGAAACAGATGCGGGAACACGTCATCGAACACGGCTACGATTTCGAAATCAATCAACCTGACGGCGTTCTCCCTTTCTTCCTCAATAAGGAGTCGTGGAGATGCGTCATTTGCCAGGAGAAATTCAATAACTTCTTAAAACTTTACGAACATATGAACGTACATTACCAACATTATATTTGCCCGACGTGTGGGAAGGGATATATGACTGCGCCCAGACTGAGGAAGCATTCAGAGGTTCATATCACTGGGACATTTCCTTGCAACGAATGCCCTAAAATATTCAGAATGCGCGCTGCCAGGGATTACCACAAGGCACACGCTCACGCCAAAGCGCCTAGATACGAGTGCCCTCAATgttCCGCTAGTGCGGACGCGGAGGCAAAAGTAGGAGTTAGACGTGTTAGAAAGTTAAAGGAAAACGTAAGCGCGCGACAGATGCGCCGGCGACGCCGCGCCAACAACGAGTTGCCGGAAGAATCTGAGAAACGTATTTCCAAAACTATGATGCGAAGGAATGCTATGACGCTCCTAGAATGTTCCACTGCTTGGGCCTTCCGCTGGTTCCACAGCGCTTTTTACTGCTCGTACTGTGATGCTAAGTTTGTAGACACTGggtccaTCGACCTCAAACTTAAATGGAAACCGAAGCGCAAGTATAACGATCACAGAGACAATGCGGCTATTATTATAGAGTGTTCCAACGTGTGCCCGTTCAGGTGGAAGCGAGGGACATTCACCTGTGCCTTCTGTCCTATTTCCTTCGGGGATTTCAACGGCGTCAGAGATCACGCCCTCGAACACCCTAACCGGGTCGAGGCGATGCGTCTCGCGCGCCCCCTAGACAACGTCAAAGTAGAGATCAGCGGCCTCCGCTGCGAACTCTGCCTACAACTCATTAAAGATGTTGAATCACTAAAGGAACACTTGGTCGAAATCCACAATAAGCCTATTAACAAGGACCACAGCATAGGCGTCACTCCCTTCCTAATAAAAGGAAAGGAGTTCATATGCACACATTGTGGAGAAGAGTTTGAGCTGTTTTCAAAATTAAACACCCATATGAATCACCATTATCCGAATAACATCTGCTTCCAATGCGGAAAAGCGTTCGCAGCCGCGCATAGGCTTAAGGCTCACTTAGTTATACATGAAGCTTCGAACAATCTCCAATACAAATGTTCTAAATGCGACGACGTGTTCACTACACGGGCTTTGAAGAACAGTCACATGGCTTTAGCTCACGGTCCCGAGTATCGCTATAGGTGCCCGTATTGCAACGACTCTTTTCTAAGATACGCAGATAGGGCTAAGCATCTTAAGACAGCGCACGATAGGAACGTAGAGTACCCTTGCCATCTATGTACAGCCGTCTTCTCTATGTGCAATCAAAGAACTAAACATATACAACAAGTGCATATTAGACACAAGCAGTTCTTCTGCGCCTTGTGTCCATACCAATTCGTCACGGCGGCGCAACTTAGGAACCACATGGTGAAGCATGTAGGGGAGAGAAAGTACCAATGTCAGATCTGTAAGAAATCTTACGCAAGAACCAAAACGCTAAGGGAACATATGCGACGGAAAGGTGAAGAGGTCGTTCAGGTCAAACAAGAATTGGCCGAGACAGAGGATATTAACGCTGCGTCCGCGGCAGCCAAACGAGAGGAGGGCGAACGGAGGCGAACCAACTTTAGAAATAATATTGCTACTATTATAGACACTACCACCGTATACCCCTTTAAGTATAGAAGAGGGATGTACCTTTGTTATTACTGCAAACATACATTCCTGGAACCCGAAAAACTTCGACAACACAACCGTATCTATCATTCCGAATCAAAAGTATTGCCTAAACCCAGAAAATATGAACCGGTGAAAATGGATTTTGCGACAGCTCTGTGTAAGCTTTGTTTGACTGAAATTAGAGATTATGCCATGATGAAAAATCATTTAACTGAACACGGCAAAGAGATAGATACGACTTACGGTGACAGCGTGCTGCCCTACCAGTTAAGCAGGGATGAGCACGTTTGTCAGGTATGCGGGAAGATATACGAGATGTTTTTAAGCTTACACAAACATATGAACGATCATTACGAGCATTATATTTGCGAGAAATGTGGGAAAAGATTCGCGACATCCCAACGTATGCTCAACCACACCCGCACTCATGAACGCGGCGTGTTTCCATGCAAACAGTGCGACCAAACCTTCCCCTCTTACGCTCCACTATACACCCACGTCGCCAAAGTACACAGATCCAATAAGAGATACAAATGCCCCATTTGTAACGAGAAATTCGTCTCTTACAAGCAAAGGCTAAAGCATCTTCATACAGTGCACGAGCAGAAAACCCCCGTTTTTCCTTGTCCATCATGCGATCGGGTCTTTGACTTGTGCAGCAAAAGAACCGCGCATATCAGGTTCCAACATTTGCAGGAACGGAACCACGTGTGCAGCGTATGTGGTATGAAGTTCTTTAGTAACTACGAACTGCAAGAGCATGCGATCAAACATGGCGGCGAGAGGATTTACCAATGTGATGTTTGTAAGAAGGCGTACGCAAGAATAAAAACGCTGCGGGAACATATGAGGATACACAACAACGACAGGCGATACACTTGTCCTGTGTGCGGGCAGAGTTTCATACAGAACTGTAGCATGAAGCAACACATTAGAGTGCATCACCCTACGCATTTGAAAGATGTATTTTAA
- Protein Sequence
- MIKIEPNDIPIESLLGEKPRYQRSARAEARFATKKNATAILECWSVSPFRWKRNQFKCAYCEANFTDCALLRLHIGTCSREHSVKDIYSKFKEMSLINVDVTDTACRLCALPYSDMKQMREHVIEHGYDFEINQPDGVLPFFLNKESWRCVICQEKFNNFLKLYEHMNVHYQHYICPTCGKGYMTAPRLRKHSEVHITGTFPCNECPKIFRMRAARDYHKAHAHAKAPRYECPQCSASADAEAKVGVRRVRKLKENVSARQMRRRRRANNELPEESEKRISKTMMRRNAMTLLECSTAWAFRWFHSAFYCSYCDAKFVDTGSIDLKLKWKPKRKYNDHRDNAAIIIECSNVCPFRWKRGTFTCAFCPISFGDFNGVRDHALEHPNRVEAMRLARPLDNVKVEISGLRCELCLQLIKDVESLKEHLVEIHNKPINKDHSIGVTPFLIKGKEFICTHCGEEFELFSKLNTHMNHHYPNNICFQCGKAFAAAHRLKAHLVIHEASNNLQYKCSKCDDVFTTRALKNSHMALAHGPEYRYRCPYCNDSFLRYADRAKHLKTAHDRNVEYPCHLCTAVFSMCNQRTKHIQQVHIRHKQFFCALCPYQFVTAAQLRNHMVKHVGERKYQCQICKKSYARTKTLREHMRRKGEEVVQVKQELAETEDINAASAAAKREEGERRRTNFRNNIATIIDTTTVYPFKYRRGMYLCYYCKHTFLEPEKLRQHNRIYHSESKVLPKPRKYEPVKMDFATALCKLCLTEIRDYAMMKNHLTEHGKEIDTTYGDSVLPYQLSRDEHVCQVCGKIYEMFLSLHKHMNDHYEHYICEKCGKRFATSQRMLNHTRTHERGVFPCKQCDQTFPSYAPLYTHVAKVHRSNKRYKCPICNEKFVSYKQRLKHLHTVHEQKTPVFPCPSCDRVFDLCSKRTAHIRFQHLQERNHVCSVCGMKFFSNYELQEHAIKHGGERIYQCDVCKKAYARIKTLREHMRIHNNDRRYTCPVCGQSFIQNCSMKQHIRVHHPTHLKDVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -