Epro041155.1
Basic Information
- Insect
- Eudemis profundana
- Gene Symbol
- -
- Assembly
- GCA_947034915.1
- Location
- CAMQQJ010000848.1:386230-410481[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00057 0.046 15.4 0.3 1 23 163 185 163 185 0.98 2 22 0.0048 0.39 12.5 1.1 2 23 205 226 204 226 0.95 3 22 0.0048 0.39 12.5 1.1 2 23 246 267 245 267 0.95 4 22 0.0048 0.39 12.5 1.1 2 23 287 308 286 308 0.95 5 22 0.0048 0.39 12.5 1.1 2 23 328 349 327 349 0.95 6 22 0.0048 0.39 12.5 1.1 2 23 369 390 368 390 0.95 7 22 0.0048 0.39 12.5 1.1 2 23 410 431 409 431 0.95 8 22 0.0048 0.39 12.5 1.1 2 23 451 472 450 472 0.95 9 22 0.0048 0.39 12.5 1.1 2 23 492 513 491 513 0.95 10 22 0.0048 0.39 12.5 1.1 2 23 533 554 532 554 0.95 11 22 0.0048 0.39 12.5 1.1 2 23 574 595 573 595 0.95 12 22 0.27 22 7.0 2.3 1 23 602 624 602 624 0.95 13 22 0.26 21 7.0 1.7 1 23 628 650 628 650 0.92 14 22 0.00052 0.042 15.6 3.8 1 23 655 678 655 678 0.96 15 22 0.073 5.9 8.8 0.1 3 23 685 706 684 706 0.94 16 22 0.52 42 6.1 0.0 2 19 717 734 716 736 0.95 17 22 0.0094 0.75 11.6 0.3 2 23 744 766 743 766 0.94 18 22 6.5e-05 0.0052 18.4 2.5 1 23 771 794 771 794 0.97 19 22 0.00053 0.043 15.5 0.5 3 23 823 843 822 843 0.97 20 22 1.3e-05 0.001 20.6 1.1 1 23 849 871 849 871 0.98 21 22 1.4e-05 0.0012 20.5 0.2 1 23 877 899 877 899 0.98 22 22 0.0024 0.19 13.5 1.9 1 23 905 928 905 928 0.96
Sequence Information
- Coding Sequence
- ATGTTCCAGCTGACCACAGACTACATCCGGACCATAGACCGCCACTCCCACCGACTCCTCCACCTAACTCTCACCCGAACCGAAACCACAGACTACAGAGACGCTCTAGAAGTAGACATAAAGAAAGAAGAAGACGCAGACAACATATTCATAGAATCTGATGATTTAAAAGTAGAATACGAAGTCAAAGACAAAATAGATGACAGCATAGATGATCCTGATTTTAGTGATGATAATGTAGAACAGATATTTGTCGCTACGAATCCGGTGAGAGATGTTAAAGTTAGGAAAAGAAAGAAGAAGCCAGAAGAGAAGAGGGTTAAGAAGAAGATAAAGAAGAGGACGTCGGATAATGATTATTTGCCGGATTTTGATTTCGCTAAGTTCGAGAGTAATTATAGTGTTGAGATTATTGCTTTGACTAAGGAACAACAGCTAGAGGAGATCCGCGCCCGGAAACAGAGCGCCAACTATCAGTACGCGGCGTACAAATGTGAAGAGTGCGGCAAAGGATTCATGGCCAACGACGCGTACAACAACCACAAGATACGACACAGCCCTTCAGTTGCTTCTGGTAACTCTAGTTACCAGAACTATCAGTACGCGGCGTGCAAGTGTGAAGAGTGCGGCAAAGGATTCATGGCCAACGACGCGTACAACAACCACAAGATACGACACAGCCCTTCAGTTGCTTCTGGTAACTCTAGTTACCAGAACTATCAGTACGCGGCGTGCAAGTGTGAAGAGTGCGGCAAAGGATTCATGGCCAACGACGCGTACAACAACCACAAGATACGACACAGCCCTTCAGTTGCTTCTGGTAACTCTAGTTACCAGAACTATCAGTACGCGGCGTGCAAGTGTGAAGAGTGCGGCAAAGGATTCATGGCCAACGACGCGTACAACAACCACAAGATACGACACAGCCCTTCAGTTGCTTCTGGTAACTCTAGTTACCAGAACTATCAGTACGCGGCGTGCAAGTGTGAAGAGTGCGGCAAAGGATTCATGGCCAACGACGCGTACAACAACCACAAGATACGACACAGCCCTTCAGTTGCTTCTGGTAACTCTAGTTACCAGAACTATCAGTACGCGGCGTGCAAGTGTGAAGAGTGCGGCAAAGGATTCATGGCCAACGACGCGTACAACAACCACAAGATACGACACAGCCCTTCAGTTGCTTCTGGTAACTCTAGTTACCAGAACTATCAGTACGCGGCGTGCAAGTGTGAAGAGTGCGGCAAAGGATTCATGGCCAACGACGCGTACAACAACCACAAGATACGACACAGCCCTTCAGTTGCTTCTGGTAACTCTAGTTACCAGAACTATCAGTACGCGGCGTGCAAGTGTGAAGAGTGCGGCAAAGGATTCATGGCCAACGACGCGTACAACAACCACAAGATACGACACAGCCCTTCAGTTGCTTCTGGTAACTCTAGTTACCAGAACTATCAGTACGCGGCGTGCAAGTGTGAAGAGTGCGGCAAAGGATTCATGGCCAACGACGCGTACAACAACCACAAGATACGACACAGCCCTTCAGTTGCTTCTGGTAACTCTAGTTACCAGAACTATCAGTACGCGGCGTGCAAGTGTGAAGAGTGCGGCAAAGGATTCATGGCCAACGACGCGTACAACAACCACAAGATACGACACAGCCCTTCAGTTGCTTCTGGTAACTCTAGTTACCAGAACTATCAGTACGCGGCGTGCAAGTGTGAAGAGTGCGGCAAAGGATTCATGGCCAACGACGCGTACAACAACCACAAGATACGACACAGCCCTAGTATGGGCGCGCACTCGTGCGAGATCTGCCTGGTGCGCTTCAAGCGGCAGTCGCGGCGCCAGGAGCACCAGGACTTGCACCGGCTCAAGTTCCTCTGCAAGGAATGCAACTTCGTCTCAAGGAACAGGTACCAGGCGAAGAAGCATTTCGAGTGGCACTCTGGCAAGATTCACGTGTGCAAACATTGTGGAGCCAGCTTCACcAAGAGTTCGACGTACCTGTCGCACGTGCGTCTGCAGCACCCCGCCATGAATGTGGCATGCGACGTGTGCGGGGAGACCTTTGTCGGCCGACTCGGCTTGTTGCAGCACAAGTCCAGGGCACATCAGAAGATCGCTGACGTGAAGCCGGAGTCCCGGTGCGCGACGTGCGGCGCGCAGTTCGAGAGCGCAGATGCGCTAGGCAGACACTTCGGCGTCTGCGACCCGACCTCCAGTCCCTGCCTGATATGTGGAGAGACGCTGTCCAGCGAGGAACTACTGCAGGCACACACTAAGGAATGCCACAGCACCGAACAGTTCAAATGTTTACAGTGTGACAAAACGTTCGCGAGCTCGTCGTCCTACGAAGTCCACCATCAGCGGGTGCACCTCAACGTGCGCTGGCGCAAGTCGCGCGACAAACGCGGCCGCCGCGCGACCAGTCGCGACCCGCCCAAACGCAAGGAGGCCATGTGTGAGATGTGCGGGAAGGCCTGCGAGTCCAACGCAGCCCTGGTGTACCACCAGCGGTCGCACACAGGGGAGCGCCCCTACAAGTGCTCGCAGTGCCCCAAGTGCTTCACCATGCCGCAGGCCCTCATCAATCATCAGCTGGTGCACTCGGACGAGCGACCCTACATGTGCTCGGTTTGCCCAAAAGCATTCAAGCAGAAGGTGGCTCTACAGTTACACAGCCGGGTACATACTGGGGAGAGGCCATACAAATGTTCCCTCTGCGACAGCTCATTCAAGCAGGGCCCGCATCTACGCACACACGTCAAACTCATGCACAACGTGCCGAGCGAGCAACGCCGGGCGAGACGCAAGCTATAG
- Protein Sequence
- MFQLTTDYIRTIDRHSHRLLHLTLTRTETTDYRDALEVDIKKEEDADNIFIESDDLKVEYEVKDKIDDSIDDPDFSDDNVEQIFVATNPVRDVKVRKRKKKPEEKRVKKKIKKRTSDNDYLPDFDFAKFESNYSVEIIALTKEQQLEEIRARKQSANYQYAAYKCEECGKGFMANDAYNNHKIRHSPSVASGNSSYQNYQYAACKCEECGKGFMANDAYNNHKIRHSPSVASGNSSYQNYQYAACKCEECGKGFMANDAYNNHKIRHSPSVASGNSSYQNYQYAACKCEECGKGFMANDAYNNHKIRHSPSVASGNSSYQNYQYAACKCEECGKGFMANDAYNNHKIRHSPSVASGNSSYQNYQYAACKCEECGKGFMANDAYNNHKIRHSPSVASGNSSYQNYQYAACKCEECGKGFMANDAYNNHKIRHSPSVASGNSSYQNYQYAACKCEECGKGFMANDAYNNHKIRHSPSVASGNSSYQNYQYAACKCEECGKGFMANDAYNNHKIRHSPSVASGNSSYQNYQYAACKCEECGKGFMANDAYNNHKIRHSPSVASGNSSYQNYQYAACKCEECGKGFMANDAYNNHKIRHSPSMGAHSCEICLVRFKRQSRRQEHQDLHRLKFLCKECNFVSRNRYQAKKHFEWHSGKIHVCKHCGASFTKSSTYLSHVRLQHPAMNVACDVCGETFVGRLGLLQHKSRAHQKIADVKPESRCATCGAQFESADALGRHFGVCDPTSSPCLICGETLSSEELLQAHTKECHSTEQFKCLQCDKTFASSSSYEVHHQRVHLNVRWRKSRDKRGRRATSRDPPKRKEAMCEMCGKACESNAALVYHQRSHTGERPYKCSQCPKCFTMPQALINHQLVHSDERPYMCSVCPKAFKQKVALQLHSRVHTGERPYKCSLCDSSFKQGPHLRTHVKLMHNVPSEQRRARRKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -