Epro039687.1
Basic Information
- Insect
- Eudemis profundana
- Gene Symbol
- -
- Assembly
- GCA_947034915.1
- Location
- CAMQQJ010000794.1:660616-666077[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.5e-05 0.0036 18.9 0.7 1 23 364 386 364 386 0.98 2 15 1.2e-05 0.001 20.7 1.3 1 23 397 419 397 419 0.98 3 15 3.5e-05 0.0028 19.2 2.6 1 23 425 447 425 447 0.96 4 15 2.1e-05 0.0017 19.9 0.5 1 23 453 475 453 475 0.97 5 15 0.064 5.2 9.0 2.0 1 20 480 499 480 502 0.94 6 15 0.00014 0.011 17.4 4.3 1 23 508 530 508 530 0.97 7 15 3.5e-06 0.00028 22.4 2.5 1 23 536 558 536 558 0.98 8 15 4e-05 0.0032 19.0 0.3 1 23 564 586 564 586 0.98 9 15 9.5e-05 0.0076 17.9 1.5 1 23 592 614 592 614 0.97 10 15 0.0052 0.42 12.4 3.0 1 23 620 642 620 642 0.92 11 15 1.5e-05 0.0012 20.4 0.6 1 23 648 670 648 670 0.99 12 15 0.0035 0.28 13.0 0.1 1 23 676 698 676 698 0.97 13 15 0.0066 0.53 12.1 6.2 1 23 704 726 704 726 0.97 14 15 4.3e-05 0.0035 19.0 1.2 1 23 732 754 732 754 0.98 15 15 4.5e-05 0.0036 18.9 1.0 1 23 760 782 760 782 0.98
Sequence Information
- Coding Sequence
- ATGTTTGTGAAAGAGGAACCAGGGTGTGTGGGCGTCTCGGATGACTGCGTGGAGGGAGAGGCTGAGTATGGTCTAGAGCCGAGCTCTGTGAGCGCGGGTGTGTGCGGCGtgagcgcggcggccgcgcgggccgggCTGTACGCCGGACACGCGGTGAAGGACGAGCTCGTGCTGGGGCCGGAGTGCTTGCAGCCGCGCGATGTGGCCTTTAAGCTTCCcgTGTGTACCGAGGAGGAATCAGAGTACCCTAAAGAGAAATTGTACCAGAAGGTGGAGGCAGAGTGCAAGAATGATAAGGCAGATAGCTCGAAGGAGTCCTCATGTTTTATCAACAACAACAATGTGACTTGCAACGCTATGGTGCTACAGACCGAGAAGCATCAGTCAGCGGTGGTTGTGAAAGAGGAACCGGGATGGTCGCTTCCCGCGGGCtcgtgcggcgtgagcgaggcggccgcgcgcgccgggctCTATACCGACCACGAGGTGAAGGACGAGCTCGTGGTGGGCCCTGAGTGCCTGCATCTGCCAAATATCAGTAACTCGCTTTGTGGTAAAGTTTCAGCTGTATCGTCTGACGTCAGTGGGGCCTTCAGACGCAAACATCCTGTGCTAAAGGAATGTGAGGTTAGACTGCAGCGCCTCCAATACCAAGAGGCGCCCGACCTGAGCCACTGGGCAGCCGGCTCGAACACAGGCAAGATTAGAAACGGGAAAGGCTACAGACATGTTGTGAAGTCTGAAGAACGTCCATCGTCCAGTATAGCGTACAAAGAGTCGCCCTTCGCACTGACGGAATGTCAGGTGAGGCTTGAACGCTTTGATATCAATAAGCTCACTATCTACCGAGGGACGGACCGAGACACAACTTCCAACACACAAACTCAAGacttagaaaataaaattaaaaacaaaaaagacaTAAAAGCTCAGGAAAGTTCTACATGCAAGTGGAGTTTGCCTCGAGAATGCTCCGTGCGGCTCGAGCGATGCCTCGCCGCCGAGCTCCGAGCGAGGCACGAGGCagttcacacaggagagaattTTGGACAGGAAATAACAGCCGACTCCGTTCCAAAGTTGACTAGCTATGAGTGCGACTCGTGCGGCAGGACGTTTAAACTGAAGCTTACCTTGATTCGCCATATTCAGTCGCATAAAAGCAATAAAAGAAGgggtaaaaaaatgtactcctGCGAGAAATGTAAACAGAAATTTTCAAACGCCGCTAGTTTCAAAAGACACATTCTGATTCACACAAGTGAGAAACTTTACCTCTGCGATATATGTGGGAAAAAGTGTTCATCGTCCGCCCACTTGAAGGAGCATGAACGAGTCCATACGGGAGAGAAACCGTTTTCGTGTGGTACATGCGGGAAGCGGTTCACGCTTAAGGGTAATTTAACGCAGCACGAGCTAATTCACGCAGGGGAGAAGTTCCCGTGTGGAGTATGCGGCAAGCAGCTGTCGCATTTGAGCACTCTATACATGCACAGAATCTGTCACGCGGGGATTAAGCCGTATTCTTGTGATATATGTCATAAAAAATTCCAGCAGCCAAATCATTTAAAGGCACATAAAGGCACTCATACCGGTGAAAAACCATATTCATGCGACGTATGCAATAAGAAATTTCGACAGTTAAACAATTTAAACAGGCATAAGAAAATTCACACAGGGGAGAAAGATTACTCTTGTGAAGTCTGTTTGAAAGTGTTTGCTGAATTAGATACTTTGAAGAGACATCAGCTAACCCACACGGGAGAGAAGCCACACTCGTGCAAAATATGTAACAAGAAATTTGCGGATAGGGGTAGTGTGAACACGCATCAACTAGTGCACTCGGAAGATAGGCCTCACTCGTGCATAATATGTAAAAAACGGTTCAAATTGCGGGGTAATTTAAAGAAGCATGAAAATATTCACACTGGAGAGAAACCCTACTCCTGTAAAACATGTGGCAAGGCATTCAGGTTATTAGCTTCTTTGCAGTTACATGAAAGAACTCACAAAGGGGTGAAAACTTTTGCGTGCCAAATATGTGGAAGAGCGTTCTTGGCAAAGGCCAATTTAACAACACATGAAAAAATTCACACAGGAATAAAACCTCACTCGTGTGATATTTGCAACAGGCGGTTCCTTTCAAAACATGATTTGAAGAGACATAAAAAAATTCACACAGGGGAGAAGCCTTTCAAGTGCGATATATGCGGGAAACGGTTTTACGAGGAGAAATATTTAAGGGcacatgaaaaaaatcacacagGACAGAAGCGATTCTCTTGTGACTTGTGCCCTAAGGGGTTTAGTCAGAAACATCGTTTGGCCGAGCATATACTGACTCATGAAAACAATGGAGGAATCAAATAA
- Protein Sequence
- MFVKEEPGCVGVSDDCVEGEAEYGLEPSSVSAGVCGVSAAAARAGLYAGHAVKDELVLGPECLQPRDVAFKLPVCTEEESEYPKEKLYQKVEAECKNDKADSSKESSCFINNNNVTCNAMVLQTEKHQSAVVVKEEPGWSLPAGSCGVSEAAARAGLYTDHEVKDELVVGPECLHLPNISNSLCGKVSAVSSDVSGAFRRKHPVLKECEVRLQRLQYQEAPDLSHWAAGSNTGKIRNGKGYRHVVKSEERPSSSIAYKESPFALTECQVRLERFDINKLTIYRGTDRDTTSNTQTQDLENKIKNKKDIKAQESSTCKWSLPRECSVRLERCLAAELRARHEAVHTGENFGQEITADSVPKLTSYECDSCGRTFKLKLTLIRHIQSHKSNKRRGKKMYSCEKCKQKFSNAASFKRHILIHTSEKLYLCDICGKKCSSSAHLKEHERVHTGEKPFSCGTCGKRFTLKGNLTQHELIHAGEKFPCGVCGKQLSHLSTLYMHRICHAGIKPYSCDICHKKFQQPNHLKAHKGTHTGEKPYSCDVCNKKFRQLNNLNRHKKIHTGEKDYSCEVCLKVFAELDTLKRHQLTHTGEKPHSCKICNKKFADRGSVNTHQLVHSEDRPHSCIICKKRFKLRGNLKKHENIHTGEKPYSCKTCGKAFRLLASLQLHERTHKGVKTFACQICGRAFLAKANLTTHEKIHTGIKPHSCDICNRRFLSKHDLKRHKKIHTGEKPFKCDICGKRFYEEKYLRAHEKNHTGQKRFSCDLCPKGFSQKHRLAEHILTHENNGGIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -