Epro020001.1
Basic Information
- Insect
- Eudemis profundana
- Gene Symbol
- -
- Assembly
- GCA_947034915.1
- Location
- CAMQQJ010000179.1:813195-821247[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.13 10 8.0 1.7 1 23 169 191 169 191 0.96 2 18 0.0039 0.31 12.8 0.1 3 20 200 217 198 218 0.88 3 18 0.00034 0.027 16.1 1.3 2 23 230 251 229 251 0.97 4 18 0.00057 0.046 15.4 0.3 3 23 259 279 258 279 0.97 5 18 0.92 74 5.3 4.5 1 15 287 301 287 310 0.73 6 18 5.4e-07 4.4e-05 24.9 2.6 1 23 315 337 315 337 0.98 7 18 0.0043 0.35 12.7 2.5 1 23 344 366 344 366 0.98 8 18 6.3e-06 0.00051 21.6 3.0 1 23 372 394 372 394 0.98 9 18 1.5e-05 0.0012 20.4 3.5 1 23 400 422 400 422 0.98 10 18 0.00074 0.059 15.1 1.5 1 23 469 491 469 491 0.98 11 18 0.0032 0.26 13.1 0.9 2 23 499 521 498 521 0.94 12 18 3.5e-07 2.8e-05 25.5 1.5 2 23 530 551 529 551 0.97 13 18 2.6e-05 0.0021 19.6 0.4 2 23 558 579 557 579 0.97 14 18 0.22 18 7.3 6.6 1 23 587 610 587 610 0.92 15 18 7.1e-07 5.7e-05 24.6 0.4 1 23 615 637 615 637 0.98 16 18 0.0001 0.0081 17.8 0.3 1 23 644 666 644 666 0.99 17 18 1.6e-05 0.0013 20.3 0.2 1 23 672 694 672 694 0.97 18 18 0.00048 0.039 15.7 0.2 1 23 700 722 700 722 0.97
Sequence Information
- Coding Sequence
- ATGGATAAATGGACCAACAGCTGCCGTGCTTGTCTATCTACATCGGAATcttttacttacttcttgtatGAAAATATATCGCCGGAGGTCTATTGGTTTTGTACTTCTCTTGAGgtaaaGGAAGACGCACTCCCTAAATCACTTTGCGACAGTTGCTGCGGGCTGCTCAAAAAATTTTCCGAGTTCAAAAAGTTATGTATAAAATCAGAAAACATCTTACACGACATTTTGACGAGTTTGGAGACTGAGAATAAAAGGTGCCTGAATTTGAAAACAGAGATCGAAGAGGATACATATGAAAAGAAATTTGAAACTAATGATGTTCTGGTGAAGACAGAGGACCTGGCTGATATTGATGATTTAGGTATAGATTTTTGTGACGATACTTATGGGGATGACATCTCAGCAGTTTATAAACTCAATAAAAGAGTCCACAATACGAAAATCAGGAAAAAATATGCAAAGCCAGTGTCAAAATTGAAGAAGGccagaaaaaaaattcagttCACCTGTGAACTGTGCTACAAAAAATTTGGTTTTAGAGAGCGTTTTGAAGCCCACAAGTTGGAACATGAGGGAAAAATAACTGCAATATACTGTGCGCCGTGCAACAAAACCTTCACGACCTGGGGCGGGCTGAAGCGGCACAAGGACTGCGAGCACACGCGCCTGTCCCCGGACCAGCTCACCTGCCGACTCTGCTCGAAGGTGTTCAAGAGCCCGCGGACGCTGAGCATCCACCGAAGCACGCATGGGGAGAGGAAGCTAAGGATATGTGACGTGTGTGGGAAGGGGTTTAAAAGCGATTTGACTTTAAAGTCTCACCTGGAAACTCACTTAGAAAATCGAGAGCGTCGATACACATGTCAACACTGCGGAAAAAAGTTCCTCAGCAAAAAAACGTGCGCCTCGCACGCTTCCCGCCGCCACAGCAACCGCCGCTACATCTGCCACCACTGCAACTACCCTTTCACAGACAAAAGCAACCTGGCCAAACACATACTAATACACGAAGGGAAACAACAACTCCACAAATGTGACTTATGCTTGAAGACATTCGCTGCACACTCCTCTTTAGTCATCCACAAACGAATCCATACAGGCGAGAAACCTTTTTCATGCAGTTATTGCCCGAAAAGTTTCTCAAATAAGCGAATGTTAGTTGATCACCATAGAATACATACAGGGGAAAAACCACATAAGTGCACAGTCTGTGAGCAGAGTTTTACGCAGCGAGGGACCATGAAGAGACATATGAAGGTGCATGAAAGAATTTATGCATCAGAAACAGATTTCTGCAAAGATATTGATGTCCACAGTGAGGAAACTGGAGTAAGtacATTAACACCAGCAAACTCAACAGAAAAGATTACtaaaagagtaaaacagaagaAATTATACAACTTTAAGTGTGAACTTTGCAAAAGAAGGTTTGCATTTAAGGAACGGCTCGAGGGTCACATGCTGAAACATGAAGGGAAAACAGCATCAATACAATGCAAGGCATGTAACAAAACGTTTAAGCAGTGGGGCGGTCTGCGCTGCCATATTGAGTCAGCCCACTCTCGACTCCCGTTCAAGGAGGTGACGTGCCAAGTATGCTCTAAAGTGTTCAAGACGCAGTCAACGCTGAAGGTACACCAGAGGACGCACGAAGAGCGCAGGGTGCAGGTGTGTGACGAGTGTGGAAGAACGTttaagagtgacgtcacattGAAGAACCACTTAGAAACCCACATAAAGAACCGCGAACGCAACTTCACATGCGACCACTGCGGGAAAAAGTACATCAGCAAGAAAACCTGCGCGAAACACGTGTACCGTCGCCACACAGACAGACAGTTCGTATGCAGCTACTGCAACTACATCTTTACCGATAAAGCTAACCTGATCCGGCACATAATGCTCCATGAAGGTCGACATCCTAAGTATAAATGTGATGTGTGTTCAAGGTCGCTAACCTCTCAGGCCTCTTTGGTTGTTCATAAGAGGATACATAGTGGGGAGAAGCCTTTTGCTTGTGGACATTGCGGGAAGAGTTTCTCGGATAAGGGAGTGTTGGTCGAGCATGAGAGAGTGCATACTGGTGAGAAGCCTTTCGCTTGTGCAGTGTGCGCGCTGCGGTTCGCGCGCCGAGGGTCCATGCGGCGGCATATGAAGGTACACAAATGA
- Protein Sequence
- MDKWTNSCRACLSTSESFTYFLYENISPEVYWFCTSLEVKEDALPKSLCDSCCGLLKKFSEFKKLCIKSENILHDILTSLETENKRCLNLKTEIEEDTYEKKFETNDVLVKTEDLADIDDLGIDFCDDTYGDDISAVYKLNKRVHNTKIRKKYAKPVSKLKKARKKIQFTCELCYKKFGFRERFEAHKLEHEGKITAIYCAPCNKTFTTWGGLKRHKDCEHTRLSPDQLTCRLCSKVFKSPRTLSIHRSTHGERKLRICDVCGKGFKSDLTLKSHLETHLENRERRYTCQHCGKKFLSKKTCASHASRRHSNRRYICHHCNYPFTDKSNLAKHILIHEGKQQLHKCDLCLKTFAAHSSLVIHKRIHTGEKPFSCSYCPKSFSNKRMLVDHHRIHTGEKPHKCTVCEQSFTQRGTMKRHMKVHERIYASETDFCKDIDVHSEETGVSTLTPANSTEKITKRVKQKKLYNFKCELCKRRFAFKERLEGHMLKHEGKTASIQCKACNKTFKQWGGLRCHIESAHSRLPFKEVTCQVCSKVFKTQSTLKVHQRTHEERRVQVCDECGRTFKSDVTLKNHLETHIKNRERNFTCDHCGKKYISKKTCAKHVYRRHTDRQFVCSYCNYIFTDKANLIRHIMLHEGRHPKYKCDVCSRSLTSQASLVVHKRIHSGEKPFACGHCGKSFSDKGVLVEHERVHTGEKPFACAVCALRFARRGSMRRHMKVHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -