Basic Information

Transcription Factor Domain

TF Family: GTF2I
Domain: GTF2I domain
PFAM: PF02946
TF Group: Other Alpha-Helix Group
Description: This region of sequence similarity is found up to six times in a variety of proteins including GTF2I. It has been suggested that this may be a DNA binding domain [2, 1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.0048 2.1e+02 3.6 0.0 28 49 31 52 29 70 0.82

2 5 0.004 1.8e+02 3.8 0.0 27 49 86 108 74 126 0.84

3 5 0.004 1.8e+02 3.8 0.0 27 49 142 164 130 182 0.84

4 5 0.004 1.8e+02 3.8 0.0 27 49 198 220 186 238 0.84

5 5 0.0041 1.8e+02 3.8 0.0 27 49 254 276 242 292 0.84

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.0048	2.1e+02	3.6	28	49	31	52	29	70	0.82
2	5	0.004	1.8e+02	3.8	27	49	86	108	74	126	0.84
3	5	0.004	1.8e+02	3.8	27	49	142	164	130	182	0.84
4	5	0.004	1.8e+02	3.8	27	49	198	220	186	238	0.84
5	5	0.0041	1.8e+02	3.8	27	49	254	276	242	292	0.84

Coding Sequence: ATGTCCCTCGGCCAGTCCATTTCGAAGTATCCTCAATCATCCCGGCGGGAGCCGAGGCAGTCCCCCGGGGCCGGACACGGCCCGCTGTGGCCTCGCCTGCAGCACTCACCCGAACGCGTACACGTCGGTGGCCTTGCAGAAGGGCAGGTGCAGCGACGTGTGCGGCCGCAGCGCGCGGATCAGCTCCGGCGCCAGGTAGCACAGCCAGCCCGGCGGGATGCCGAGGCTGTCCCCCGGGCTGGACACGGCCCGCTGTGGCCTCGCCTGCAGCACTCACCCGAACGCGTACACGTCGGTGGCCTTGCAGAAGGGCAGGTGCAGCGACGTGTGCGGCCGCAGCGCGCGGATCAGCTCCGGCGCCAGGTAGCACAGCCAGCCCGGCGGGATGCCGAGGCTGTCCCCCGGGCTGGACACGGCCCGCTGTGGCCTCGCCTGCAGCACTCACCCGAACGCGTACACGTCGGTGGCCTTGCAGAAGGGCAGGTGCAGCGACGTGTGCGGCCGCAGCGCGCGGATCAGCTCCGGCGCCAGGTAGCACAGCCAGCCCGGCGGGATGCCGAGGCTGTCCCCCGGGCTGGACACGGCCCGCTGTGGCCTCGCCTGCAGCACTCACCCGAACGCGTACACGTCGGTGGCCTTGCAGAAGGGCAGGTGCAGCGACGTGTGCGGCCGCAGCGCGCGGATCAGCTCCGGCGCCAGGTAGCACAGCCAGCCCGGCGGGATGCCGAGGCTGTCCCCCGGGCTGGACACGGCCCGCTGTGGCCTCGCCTGCAGCACTCACCCGAACGCGTACACGTCGGTGGCCTTGCAGAAGGGCAGGTGCAGCGACGTGTGCGGCCGCAGCGCGCGGATCAGCTCCGGCGCCAGGTAGCACAGCCAGCCCGGCGGGAGCCGAGGCTGTCCCCCGGGCTGGACACGGCCCGCTGTGGCCTCGCCTGCAGCACTCACCCGAACGCGTACACGTCGGTGGCCTTGCAGAAGGGCAGGTGCAGCGACGTGTGCGGCCGCAGCGCGCGGATCAGCTCCGGCGCCAGGTAG
Protein Sequence: MSLGQSISKYPQSSRREPRQSPGAGHGPLWPRLQHSPERVHVGGLAEGQVQRRVRPQRADQLRRQVAQPARRDAEAVPRAGHGPLWPRLQHSPERVHVGGLAEGQVQRRVRPQRADQLRRQVAQPARRDAEAVPRAGHGPLWPRLQHSPERVHVGGLAEGQVQRRVRPQRADQLRRQVAQPARRDAEAVPRAGHGPLWPRLQHSPERVHVGGLAEGQVQRRVRPQRADQLRRQVAQPARRDAEAVPRAGHGPLWPRLQHSPERVHVGGLAEGQVQRRVRPQRADQLRRQVAQPARREPRLSPGLDTARCGLACSTHPNAYTSVALQKGRCSDVCGRSARISSGAR

Sequence clustering based on sequence similarity using MMseqs2